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Test name: /ext/standard/tests/strings/setlocale_variation2.phpt
Version: 5.4.0



Goto: PHPInfo     Build environment

PHPInfo

phpinfo()
PHP Version => 5.4.0

System => Linux reswebdev04 2.6.32.12-0.7-default #1 SMP 2010-05-20 11:14:20 +0200 x86_64
Build Date => Mar 20 2012 17:06:35
Configure Command =>  './configure'  '--prefix=/gne/research/apps/php/5.4/x86_64-linux-2.6-sles11' '--with-apxs2=/usr/sbin/apxs2' '--with-mysql'
Server API => Command Line Interface
Virtual Directory Support => disabled
Configuration File (php.ini) Path => /gne/research/apps/php/5.4/x86_64-linux-2.6-sles11/lib
Loaded Configuration File => (none)
Scan this dir for additional .ini files => (none)
Additional .ini files parsed => (none)
PHP API => 20100412
PHP Extension => 20100525
Zend Extension => 220100525
Zend Extension Build => API220100525,NTS
PHP Extension Build => API20100525,NTS
Debug Build => no
Thread Safety => disabled
Zend Signal Handling => disabled
Zend Memory Manager => enabled
Zend Multibyte Support => disabled
IPv6 Support => enabled
DTrace Support => disabled

Registered PHP Streams => php, file, glob, data, http, ftp, phar
Registered Stream Socket Transports => tcp, udp, unix, udg
Registered Stream Filters => convert.iconv.*, string.rot13, string.toupper, string.tolower, string.strip_tags, convert.*, consumed, dechunk

This program makes use of the Zend Scripting Language Engine:
Zend Engine v2.4.0, Copyright (c) 1998-2012 Zend Technologies


 _______________________________________________________________________


Configuration

Core

PHP Version => 5.4.0

Directive => Local Value => Master Value
allow_url_fopen => On => On
allow_url_include => Off => Off
always_populate_raw_post_data => Off => Off
arg_separator.input => & => &
arg_separator.output => & => &
asp_tags => Off => Off
auto_append_file => no value => no value
auto_globals_jit => On => On
auto_prepend_file => no value => no value
browscap => no value => no value
default_charset => no value => no value
default_mimetype => text/html => text/html
disable_classes => no value => no value
disable_functions => no value => no value
display_errors => STDERR => STDERR
display_startup_errors => Off => Off
doc_root => no value => no value
docref_ext => no value => no value
docref_root => no value => no value
enable_dl => On => On
enable_post_data_reading => On => On
error_append_string => no value => no value
error_log => no value => no value
error_prepend_string => no value => no value
error_reporting => no value => no value
exit_on_timeout => Off => Off
expose_php => On => On
extension_dir => /gne/research/apps/php/5.4/x86_64-linux-2.6-sles11/lib/php/extensions/no-debug-non-zts-20100525 => /gne/research/apps/php/5.4/x86_64-linux-2.6-sles11/lib/php/extensions/no-debug-non-zts-20100525
file_uploads => On => On
highlight.comment => <font style="color: #FF8000">#FF8000</font> => <font style="color: #FF8000">#FF8000</font>
highlight.default => <font style="color: #0000BB">#0000BB</font> => <font style="color: #0000BB">#0000BB</font>
highlight.html => <font style="color: #000000">#000000</font> => <font style="color: #000000">#000000</font>
highlight.keyword => <font style="color: #007700">#007700</font> => <font style="color: #007700">#007700</font>
highlight.string => <font style="color: #DD0000">#DD0000</font> => <font style="color: #DD0000">#DD0000</font>
html_errors => Off => Off
ignore_repeated_errors => Off => Off
ignore_repeated_source => Off => Off
ignore_user_abort => Off => Off
implicit_flush => On => On
include_path => .:/gne/research/apps/php/5.4/x86_64-linux-2.6-sles11/lib/php => .:/gne/research/apps/php/5.4/x86_64-linux-2.6-sles11/lib/php
log_errors => Off => Off
log_errors_max_len => 1024 => 1024
mail.add_x_header => Off => Off
mail.force_extra_parameters => no value => no value
mail.log => no value => no value
max_execution_time => 0 => 0
max_file_uploads => 20 => 20
max_input_nesting_level => 64 => 64
max_input_time => -1 => -1
max_input_vars => 1000 => 1000
memory_limit => 128M => 128M
open_basedir => no value => no value
output_buffering => 0 => 0
output_handler => no value => no value
post_max_size => 8M => 8M
precision => 14 => 14
realpath_cache_size => 16K => 16K
realpath_cache_ttl => 120 => 120
register_argc_argv => On => On
report_memleaks => On => On
report_zend_debug => Off => Off
request_order => no value => no value
sendmail_from => no value => no value
sendmail_path => /usr/sbin/sendmail -t -i  => /usr/sbin/sendmail -t -i 
serialize_precision => 17 => 17
short_open_tag => On => On
SMTP => localhost => localhost
smtp_port => 25 => 25
sql.safe_mode => Off => Off
track_errors => Off => Off
unserialize_callback_func => no value => no value
upload_max_filesize => 2M => 2M
upload_tmp_dir => no value => no value
user_dir => no value => no value
user_ini.cache_ttl => 300 => 300
user_ini.filename => .user.ini => .user.ini
variables_order => EGPCS => EGPCS
xmlrpc_error_number => 0 => 0
xmlrpc_errors => Off => Off
zend.detect_unicode => On => On
zend.enable_gc => On => On
zend.multibyte => Off => Off
zend.script_encoding => no value => no value

ctype

ctype functions => enabled

date

date/time support => enabled
"Olson" Timezone Database Version => 2011.14
Timezone Database => internal
Default timezone => UTC

Directive => Local Value => Master Value
date.default_latitude => 31.7667 => 31.7667
date.default_longitude => 35.2333 => 35.2333
date.sunrise_zenith => 90.583333 => 90.583333
date.sunset_zenith => 90.583333 => 90.583333
date.timezone => no value => no value

dom

DOM/XML => enabled
DOM/XML API Version => 20031129
libxml Version => 2.7.6
HTML Support => enabled
XPath Support => enabled
XPointer Support => enabled
Schema Support => enabled
RelaxNG Support => enabled

ereg

Regex Library => Bundled library enabled

fileinfo

fileinfo support => enabled
version => 1.0.5

filter

Input Validation and Filtering => enabled
Revision => $Revision: 321634 $

Directive => Local Value => Master Value
filter.default => unsafe_raw => unsafe_raw
filter.default_flags => no value => no value

hash

hash support => enabled
Hashing Engines => md2 md4 md5 sha1 sha224 sha256 sha384 sha512 ripemd128 ripemd160 ripemd256 ripemd320 whirlpool tiger128,3 tiger160,3 tiger192,3 tiger128,4 tiger160,4 tiger192,4 snefru snefru256 gost adler32 crc32 crc32b fnv132 fnv164 joaat haval128,3 haval160,3 haval192,3 haval224,3 haval256,3 haval128,4 haval160,4 haval192,4 haval224,4 haval256,4 haval128,5 haval160,5 haval192,5 haval224,5 haval256,5 

iconv

iconv support => enabled
iconv implementation => glibc
iconv library version => 2.11.1

Directive => Local Value => Master Value
iconv.input_encoding => ISO-8859-1 => ISO-8859-1
iconv.internal_encoding => ISO-8859-1 => ISO-8859-1
iconv.output_encoding => ISO-8859-1 => ISO-8859-1

json

json support => enabled
json version => 1.2.1

libxml

libXML support => active
libXML Compiled Version => 2.7.6
libXML Loaded Version => 20706
libXML streams => enabled

mysql

MySQL Support => enabled
Active Persistent Links => 0
Active Links => 0
Client API version => mysqlnd 5.0.10 - 20111026 - $Revision: 323634 $

Directive => Local Value => Master Value
mysql.allow_local_infile => On => On
mysql.allow_persistent => On => On
mysql.connect_timeout => 60 => 60
mysql.default_host => no value => no value
mysql.default_password => no value => no value
mysql.default_port => no value => no value
mysql.default_socket => no value => no value
mysql.default_user => no value => no value
mysql.max_links => Unlimited => Unlimited
mysql.max_persistent => Unlimited => Unlimited
mysql.trace_mode => Off => Off

mysqlnd

mysqlnd => enabled
Version => mysqlnd 5.0.10 - 20111026 - $Revision: 323634 $
Compression => not supported
SSL => supported
Command buffer size => 4096
Read buffer size => 32768
Read timeout => 31536000
Collecting statistics => Yes
Collecting memory statistics => No
Tracing => n/a
Loaded plugins => mysqlnd,example,debug_trace,auth_plugin_mysql_native_password,auth_plugin_mysql_clear_password
API Extensions => mysql

mysqlnd statistics =>  
bytes_sent => 0
bytes_received => 0
packets_sent => 0
packets_received => 0
protocol_overhead_in => 0
protocol_overhead_out => 0
bytes_received_ok_packet => 0
bytes_received_eof_packet => 0
bytes_received_rset_header_packet => 0
bytes_received_rset_field_meta_packet => 0
bytes_received_rset_row_packet => 0
bytes_received_prepare_response_packet => 0
bytes_received_change_user_packet => 0
packets_sent_command => 0
packets_received_ok => 0
packets_received_eof => 0
packets_received_rset_header => 0
packets_received_rset_field_meta => 0
packets_received_rset_row => 0
packets_received_prepare_response => 0
packets_received_change_user => 0
result_set_queries => 0
non_result_set_queries => 0
no_index_used => 0
bad_index_used => 0
slow_queries => 0
buffered_sets => 0
unbuffered_sets => 0
ps_buffered_sets => 0
ps_unbuffered_sets => 0
flushed_normal_sets => 0
flushed_ps_sets => 0
ps_prepared_never_executed => 0
ps_prepared_once_executed => 0
rows_fetched_from_server_normal => 0
rows_fetched_from_server_ps => 0
rows_buffered_from_client_normal => 0
rows_buffered_from_client_ps => 0
rows_fetched_from_client_normal_buffered => 0
rows_fetched_from_client_normal_unbuffered => 0
rows_fetched_from_client_ps_buffered => 0
rows_fetched_from_client_ps_unbuffered => 0
rows_fetched_from_client_ps_cursor => 0
rows_affected_normal => 0
rows_affected_ps => 0
rows_skipped_normal => 0
rows_skipped_ps => 0
copy_on_write_saved => 0
copy_on_write_performed => 0
command_buffer_too_small => 0
connect_success => 0
connect_failure => 0
connection_reused => 0
reconnect => 0
pconnect_success => 0
active_connections => 0
active_persistent_connections => 0
explicit_close => 0
implicit_close => 0
disconnect_close => 0
in_middle_of_command_close => 0
explicit_free_result => 0
implicit_free_result => 0
explicit_stmt_close => 0
implicit_stmt_close => 0
mem_emalloc_count => 0
mem_emalloc_amount => 0
mem_ecalloc_count => 0
mem_ecalloc_amount => 0
mem_erealloc_count => 0
mem_erealloc_amount => 0
mem_efree_count => 0
mem_efree_amount => 0
mem_malloc_count => 0
mem_malloc_amount => 0
mem_calloc_count => 0
mem_calloc_amount => 0
mem_realloc_count => 0
mem_realloc_amount => 0
mem_free_count => 0
mem_free_amount => 0
mem_estrndup_count => 0
mem_strndup_count => 0
mem_estndup_count => 0
mem_strdup_count => 0
proto_text_fetched_null => 0
proto_text_fetched_bit => 0
proto_text_fetched_tinyint => 0
proto_text_fetched_short => 0
proto_text_fetched_int24 => 0
proto_text_fetched_int => 0
proto_text_fetched_bigint => 0
proto_text_fetched_decimal => 0
proto_text_fetched_float => 0
proto_text_fetched_double => 0
proto_text_fetched_date => 0
proto_text_fetched_year => 0
proto_text_fetched_time => 0
proto_text_fetched_datetime => 0
proto_text_fetched_timestamp => 0
proto_text_fetched_string => 0
proto_text_fetched_blob => 0
proto_text_fetched_enum => 0
proto_text_fetched_set => 0
proto_text_fetched_geometry => 0
proto_text_fetched_other => 0
proto_binary_fetched_null => 0
proto_binary_fetched_bit => 0
proto_binary_fetched_tinyint => 0
proto_binary_fetched_short => 0
proto_binary_fetched_int24 => 0
proto_binary_fetched_int => 0
proto_binary_fetched_bigint => 0
proto_binary_fetched_decimal => 0
proto_binary_fetched_float => 0
proto_binary_fetched_double => 0
proto_binary_fetched_date => 0
proto_binary_fetched_year => 0
proto_binary_fetched_time => 0
proto_binary_fetched_datetime => 0
proto_binary_fetched_timestamp => 0
proto_binary_fetched_string => 0
proto_binary_fetched_blob => 0
proto_binary_fetched_enum => 0
proto_binary_fetched_set => 0
proto_binary_fetched_geometry => 0
proto_binary_fetched_other => 0
init_command_executed_count => 0
init_command_failed_count => 0
com_quit => 0
com_init_db => 0
com_query => 0
com_field_list => 0
com_create_db => 0
com_drop_db => 0
com_refresh => 0
com_shutdown => 0
com_statistics => 0
com_process_info => 0
com_connect => 0
com_process_kill => 0
com_debug => 0
com_ping => 0
com_time => 0
com_delayed_insert => 0
com_change_user => 0
com_binlog_dump => 0
com_table_dump => 0
com_connect_out => 0
com_register_slave => 0
com_stmt_prepare => 0
com_stmt_execute => 0
com_stmt_send_long_data => 0
com_stmt_close => 0
com_stmt_reset => 0
com_stmt_set_option => 0
com_stmt_fetch => 0
com_deamon => 0
bytes_received_real_data_normal => 0
bytes_received_real_data_ps => 0

example statistics =>  
stat1 => 0
stat2 => 0

pcre

PCRE (Perl Compatible Regular Expressions) Support => enabled
PCRE Library Version => 8.12 2011-01-15

Directive => Local Value => Master Value
pcre.backtrack_limit => 1000000 => 1000000
pcre.recursion_limit => 100000 => 100000

PDO

PDO support => enabled
PDO drivers => sqlite

pdo_sqlite

PDO Driver for SQLite 3.x => enabled
SQLite Library => 3.7.7.1

Phar

Phar: PHP Archive support => enabled
Phar EXT version => 2.0.1
Phar API version => 1.1.1
SVN revision => $Revision: 321634 $
Phar-based phar archives => enabled
Tar-based phar archives => enabled
ZIP-based phar archives => enabled
gzip compression => disabled (install ext/zlib)
bzip2 compression => disabled (install pecl/bz2)
OpenSSL support => disabled (install ext/openssl)


Phar based on pear/PHP_Archive, original concept by Davey Shafik.
Phar fully realized by Gregory Beaver and Marcus Boerger.
Portions of tar implementation Copyright (c) 2003-2009 Tim Kientzle.
Directive => Local Value => Master Value
phar.cache_list => no value => no value
phar.readonly => On => On
phar.require_hash => On => On

posix

Revision => $Revision: 321634 $

Reflection

Reflection => enabled
Version => $Revision: 321634 $

session

Session Support => enabled
Registered save handlers => files user 
Registered serializer handlers => php php_binary 

Directive => Local Value => Master Value
session.auto_start => Off => Off
session.cache_expire => 180 => 180
session.cache_limiter => nocache => nocache
session.cookie_domain => no value => no value
session.cookie_httponly => Off => Off
session.cookie_lifetime => 0 => 0
session.cookie_path => / => /
session.cookie_secure => Off => Off
session.entropy_file => /dev/urandom => /dev/urandom
session.entropy_length => 32 => 32
session.gc_divisor => 100 => 100
session.gc_maxlifetime => 1440 => 1440
session.gc_probability => 1 => 1
session.hash_bits_per_character => 4 => 4
session.hash_function => 0 => 0
session.name => PHPSESSID => PHPSESSID
session.referer_check => no value => no value
session.save_handler => files => files
session.save_path => no value => no value
session.serialize_handler => php => php
session.upload_progress.cleanup => On => On
session.upload_progress.enabled => On => On
session.upload_progress.freq => 1% => 1%
session.upload_progress.min_freq => 1 => 1
session.upload_progress.name => PHP_SESSION_UPLOAD_PROGRESS => PHP_SESSION_UPLOAD_PROGRESS
session.upload_progress.prefix => upload_progress_ => upload_progress_
session.use_cookies => On => On
session.use_only_cookies => On => On
session.use_trans_sid => 0 => 0

SimpleXML

Simplexml support => enabled
Revision => $Revision: 321634 $
Schema support => enabled

SPL

SPL support => enabled
Interfaces => Countable, OuterIterator, RecursiveIterator, SeekableIterator, SplObserver, SplSubject
Classes => AppendIterator, ArrayIterator, ArrayObject, BadFunctionCallException, BadMethodCallException, CachingIterator, CallbackFilterIterator, DirectoryIterator, DomainException, EmptyIterator, FilesystemIterator, FilterIterator, GlobIterator, InfiniteIterator, InvalidArgumentException, IteratorIterator, LengthException, LimitIterator, LogicException, MultipleIterator, NoRewindIterator, OutOfBoundsException, OutOfRangeException, OverflowException, ParentIterator, RangeException, RecursiveArrayIterator, RecursiveCachingIterator, RecursiveCallbackFilterIterator, RecursiveDirectoryIterator, RecursiveFilterIterator, RecursiveIteratorIterator, RecursiveRegexIterator, RecursiveTreeIterator, RegexIterator, RuntimeException, SplDoublyLinkedList, SplFileInfo, SplFileObject, SplFixedArray, SplHeap, SplMinHeap, SplMaxHeap, SplObjectStorage, SplPriorityQueue, SplQueue, SplStack, SplTempFileObject, UnderflowException, UnexpectedValueException

sqlite3

SQLite3 support => enabled
SQLite3 module version => 0.7
SQLite Library => 3.7.7.1

Directive => Local Value => Master Value
sqlite3.extension_dir => no value => no value

standard

Dynamic Library Support => enabled
Path to sendmail => /usr/sbin/sendmail -t -i 

Directive => Local Value => Master Value
assert.active => 1 => 1
assert.bail => 0 => 0
assert.callback => no value => no value
assert.quiet_eval => 0 => 0
assert.warning => 1 => 1
auto_detect_line_endings => 0 => 0
default_socket_timeout => 60 => 60
from => no value => no value
url_rewriter.tags => a=href,area=href,frame=src,form=,fieldset= => a=href,area=href,frame=src,form=,fieldset=
user_agent => no value => no value

tokenizer

Tokenizer Support => enabled

xml

XML Support => active
XML Namespace Support => active
libxml2 Version => 2.7.6

xmlreader

XMLReader => enabled

xmlwriter

XMLWriter => enabled

Additional Modules

Module Name

Environment

Variable => Value
LESSKEY => /etc/lesskey.bin
MODULE_VERSION_STACK => 3.2.6
MANPATH => /usr/share/man
INFODIR => /usr/local/info:/usr/share/info:/usr/info
DCMDICPATH => /gne/research/apps/BIR/10.0/BIR/DCMTK-3.5.4/lib/dicom.dic
NNTPSERVER => news
HOSTNAME => reswebdev04
TEST_PHP_SRCDIR => /gne/research/apps/php/src/php-5.4.0
R_DEFAULT_PACKAGES => stats,graphics,grDevices,utils,datasets,methods,base
DNAUPLOADCONFIGFILE => /gne/research/apps/seq-utils/prd/arch-indep/dat/dnaupload.conf
XKEYSYMDB => /usr/share/X11/XKeysymDB
SHELL => /bin/bash
RESEARCH_PREFIX => /gne/research
TERM => vt100
HOST => reswebdev04
PROFILEREAD => true
MAKEFLAGS =>  
HISTSIZE => 1000
SSH_CLIENT => deleted
AVW => /gne/research/apps/BIR/10.0/BIR/AVW-10.0
PERL5LIB => /gne/research/apps/seq-utils/prd/arch-indep/perl5:/gne/research/apps/imagemagick/6.5.9-0/x86_64-linux-2.6-sles11/lib/perl5/site_perl:/gne/research/apps/imagemagick/6.5.9-0/x86_64-linux-2.6-sles11/lib/perl5:/gne/research/apps/perl-modules/prd/lib/perl5/site_perl:/gne/research/apps/perl-modules/prd/lib/perl5:/gne/research/apps/gne-perl-modules/prd/lib/perl5/site_perl:/gne/research/apps/gne-perl-modules/prd/lib/perl5:/gne/research/apps/bioperl/prd/lib/perl5/site_perl:/gne/research/apps/bioperl/prd/lib/perl5:/gne/research/apps/unison/prd/perl5
MAGICK_CONFIGURE_PATH => /gne/research/apps/imagemagick/6.5.9-0/arch-indep/config
MORE => -sl
LSF_SERVERDIR => /opt/lsf/8.0/linux2.6-glibc2.3-x86_64/etc
PBS_HOME => /var/spool/PBS
SSH_TTY => deleted
SEQUTILSCONFIGDIR => /gne/research/apps/seq-utils/prd/arch-indep/dat
LSF_LIBDIR => /opt/lsf/8.0/linux2.6-glibc2.3-x86_64/lib
JRE_HOME => /usr/lib64/jvm/java/jre
GNE_DEFAULT_R_LIBRARY => /gne/research/apps/R/2.14-20111031/x86_64-linux-2.6-sles11/lib64/R/library
GNE_SEQUENCE_ANALYSISROOT => /gne/research/apps/gne-sequence-analysis/prd/x86_64-linux-2.6-sles11
MODULEPLATFORM => x86_64-linux-2.6-sles11
USER => compbio
ANA_DIR => /gnet/is2/data/bmi/CT/.ANA_DIR
PHRED_PARAMETER_FILE => /gne/research/apps/gne-sequence-analysis/dat/arch-indep/phredpar.dat
LS_COLORS => no=00:fi=00:bd=40;33;01:cd=40;33;01:di=01;33:pi=40;33:ln=00:or=01;37;41:so=01;35:ex=01;32:*~=00;35:*.bak=00;35:*-orig=00;35:*.Z=01;36:*.gz=01;36:*.bz2=01;36:*.lzh=01;36:*.tar=01;36:*.taz=01;36:*.tgz=01;36:*.z=01;36:*.zip=01;36:
LD_LIBRARY_PATH => /gne/research/apps/R/2.14-20111031/x86_64-linux-2.6-sles11/lib64/R/lib:/gne/research/apps/openmpi/1.4.3/x86_64-linux-2.6-sles11/gnu/lib:/gne/research/apps/netcdf/4.0.1/x86_64-linux-2.6-sles11/lib:/gne/research/apps/gsl/1.15/x86_64-linux-2.6-sles11/lib:/gne/research/apps/hdf5/1.8.4/x86_64-linux-2.6-sles11/lib:/gne/research/apps/ggobi/2.1.8/x86_64-linux-2.6-sles11/lib:/gne/research/apps/imagemagick/6.5.9-0/x86_64-linux-2.6-sles11/lib:/gne/research/apps/jags/3.1.0/x86_64-linux-2.6-sles11/lib:/gne/research/apps/root/5.27.04/x86_64-linux-2.6-sles11/lib/root:/gne/research/apps/gne-sequence-analysis/lib/x86_64-linux-2.6-sles11:/gne/research/apps/gmap/prd/x86_64-linux-2.6-sles11/lib:/gne/research/apps/fftw/3.2.2/x86_64-linux-2.6-sles11/gnu/double/lib:/gne/research/apps/EMBOSS/6.2.0/x86_64-linux-2.6-sles11/lib:/gne/research/apps/BIR/10.0/BIR/AVW-10.0/AMD_LINUX64/lib:/opt/lsf/8.0/linux2.6-glibc2.3-x86_64/lib:/gne/research/apps/oracle-client/prd/x86_64-linux-2.6-sles11/lib
DISABLE_AUTO_AVW_FILE_EXTENSION => 1
TWO_TASK => bioprd1
JALVIEW => /gne/research/apps/Jalview/prd
SWEAVE_STYLEPATH_DEFAULT => TRUE
SUDO_USER => jlfitz
PARTEKLM_LICENSE_FILE => 27000@resflexlm01.gene.com
ORACLE_SID => bioprd1
SUDO_UID => 1532
XNLSPATH => /usr/share/X11/nls
ENV => /etc/bash.bashrc
SSH_AUTH_SOCK => deleted
HOSTTYPE => x86_64
AAVW => /gne/research/apps/BIR/10.0/BIR/Analyze-10.0
TEXMFLOCAL => /gne/research/apps/R/2.14-20111031/x86_64-linux-2.6-sles11/lib64/R/share/texmf
QSUB_UTILSBASE => /gne/research/apps/qsub-utils/prd/arch-indep
USERNAME => compbio
APPS => /gne/research/apps/BIR/10.0/BIR/Apps-10.0
FROM_HEADER =>  
MAKELEVEL => 1
PAGER => less
MFLAGS =>  
CSHEDIT => emacs
XDG_CONFIG_DIRS => /etc/xdg
MINICOM => -c on
PATH => /gne/research/apps/seq-utils/prd/x86_64-linux-2.6-sles11/bin:/gne/research/apps/adobereader/prd/x86_64-linux-2.6-sles11/Adobe/Reader8/bin:/gne/research/apps/unison/prd/tools/bin:/gne/research/apps/subversion/1.6.11/x86_64-linux-2.6-sles11/bin:/gne/research/apps/qsub-utils/prd/arch-indep/bin:/gne/research/apps/research-utils/prd/x86_64-linux-2.6-sles11/bin:/gne/research/apps/research-utils/prd/arch-indep/bin:/gne/research/apps/R/2.14-20111031/x86_64-linux-2.6-sles11/bin:/gne/research/apps/openmpi/1.4.3/x86_64-linux-2.6-sles11/gnu/bin:/gne/research/apps/netcdf/4.0.1/x86_64-linux-2.6-sles11/bin:/gne/research/apps/gsl/1.15/x86_64-linux-2.6-sles11/bin:/gne/research/apps/hdf5/1.8.4/x86_64-linux-2.6-sles11/bin:/gne/research/apps/ggobi/2.1.8/x86_64-linux-2.6-sles11/bin:/gne/research/apps/imagemagick/6.5.9-0/x86_64-linux-2.6-sles11/bin:/gne/research/apps/jags/3.1.0/x86_64-linux-2.6-sles11/bin:/gne/research/apps/root/5.27.04/x86_64-linux-2.6-sles11/bin:/gne/research/apps/texlive/2011/bin/x86_64-linux:/gne/research/apps/java/java6/x86_64-linux-2.6-sles11/jdk1.6.0_02/bin:/gne/research/apps/pymol/1.4.1/x86_64-linux-2.6-sles11/pymol:/gne/research/apps/psipred/prd/x86_64-linux-2.6-sles11/bin:/gne/research/apps/perl-modules/prd/sbin:/gne/research/apps/perl-modules/prd/bin:/usr/pbs/bin:/gne/research/apps/partek/6.6/partekgs/bin:/gne/research/apps/mview/prd/bin:/gne/research/apps/moe/moe-2011.10/x86_64-linux-2.6-sles11/bin-lnux:/gne/research/apps/gne-perl-modules/prd/sbin:/gne/research/apps/gne-perl-modules/prd/bin:/gne/research/apps/gne-sequence-analysis/bin/arch-indep:/gne/research/apps/gne-sequence-analysis/prd/arch-indep/bin:/gne/research/apps/gne-sequence-analysis/bin/x86_64-linux-2.6-sles11:/gne/research/apps/gne-sequence-analysis/prd/x86_64-linux-2.6-sles11/bin:/gne/research/apps/gmap/prd/x86_64-linux-2.6-sles11/bin:/gne/research/apps/fftw/3.2.2/x86_64-linux-2.6-sles11/gnu/double/bin:/gne/research/apps/EMBOSS/6.2.0/x86_64-linux-2.6-sles11/bin:/gne/research/apps/BIR/10.0/BIR/bin:/gne/research/apps/BIR/10.0/BIR/BIRlic-10.0/AMD_LINUX64/bin:/gne/research/apps/BIR/10.0/BIR/Tools:/gne/research/apps/BIR/10.0/BIR/AVW-10.0/AMD_LINUX64/bin:/gne/research/apps/BIR/10.0/BIR/Apps/AMD_LINUX64/bin:/gne/research/apps/BIR/10.0/BIR/DCMTK-3.5.4/AMD_LINUX64/bin:/gne/research/apps/BIR/10.0/BIR/Apps/TK/bin:/gne/research/apps/BIR/10.0/BIR/TCL-TK8.5.2/AMD_LINUX64/bin:/gne/research/apps/bioperl/prd/bin:/opt/lsf/8.0/linux2.6-glibc2.3-x86_64/etc:/opt/lsf/8.0/linux2.6-glibc2.3-x86_64/bin:/gne/research/bin:/gne/home/compbio/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gne/research/apps/oracle-client/prd/x86_64-linux-2.6-sles11/bin
MAIL => /var/mail/jlfitz
MODULE_VERSION => 3.2.6
CPU => x86_64
_ => /gne/research/apps/php/src/php-5.4.0/sapi/cli/php
JAVA_BINDIR => /gne/research/apps/java/java6/x86_64-linux-2.6-sles11/jdk1.6.0_02/bin
PWD => /gne/research/apps/php/src/php-5.4.0
INPUTRC => /gne/home/compbio/.inputrc
JAVA_HOME => /gne/research/apps/java/java6/x86_64-linux-2.6-sles11/jdk1.6.0_02
_LMFILES_ => /gne/research/share/modules/apps/lsf/8.0:/gne/research/share/modules/apps/apbs/prd:/gne/research/share/modules/apps/BIG-PI/prd:/gne/research/share/modules/apps/bioperl/prd:/gne/research/share/modules/apps/BIR/prd:/gne/research/share/modules/apps/compass/prd:/gne/research/share/modules/apps/EMBOSS/prd:/gne/research/share/modules/apps/fftw/3.2.2_gnu_double:/gne/research/share/modules/apps/gmap/prd:/gne/research/share/modules/apps/gne-sequence-analysis/prd:/gne/research/share/modules/apps/gne-perl-modules/prd:/gne/research/share/modules/apps/hmmer/prd:/gne/research/share/modules/apps/Jalview/prd:/gne/research/share/modules/apps/ldhmmer/prd:/gne/research/share/modules/apps/moe/2011.10:/gne/research/share/modules/apps/muscle/prd:/gne/research/share/modules/apps/mustang/prd:/gne/research/share/modules/apps/mview/prd:/gne/research/share/modules/apps/oracle-client/prd:/gne/research/share/modules/apps/partek/prd:/gne/research/share/modules/apps/pbs/prd:/gne/research/share/modules/apps/oracle-client/z_prd:/gne/research/share/modules/apps/perl-modules/prd:/gne/research/share/modules/apps/postgresql/prd:/gne/research/share/modules/apps/protcomp/prd:/gne/research/share/modules/apps/psipred/prd:/gne/research/share/modules/apps/pymol/1.4.1:/gne/research/share/modules/apps/java/6:/gne/research/share/modules/apps/texlive/2011:/gne/research/share/modules/apps/root/5.27.04:/gne/research/share/modules/apps/jags/3.1.0:/gne/research/share/modules/apps/imagemagick/6.5.9-0:/gne/research/share/modules/apps/ggobi/2.1.8:/gne/research/share/modules/apps/hdf5/1.8.4:/gne/research/share/modules/apps/gsl/1.15:/gne/research/share/modules/apps/netcdf/4.0.1:/gne/research/share/modules/apps/openmpi/1.4.3-gnu:/gne/research/share/modules/apps/R-local/2.14:/gne/research/share/modules/apps/R/2.14:/gne/research/share/modules/apps/perl-modules/z_prd:/gne/research/share/modules/apps/research-utils/prd:/gne/research/share/modules/apps/qsub-utils/prd:/gne/research/share/modules/apps/signalp/prd:/gne/research/share/modules/apps/subversion/prd:/gne/research/share/modules/apps/TMHMM/prd:/gne/research/share/modules/apps/unison/prd:/gne/research/share/modules/apps/weblogo/prd:/gne/research/share/modules/apps/adobereader/prd:/gne/research/share/modules/apps/graphviz/prd:/gne/research/share/modules/apps/seq-utils/prd:/gne/research/share/modules/dept/research/prd:/gne/research/share/modules/hosts/z_prd
ITK_VERSION => ITK-2.4
LANG => en_US.UTF-8
TEST_PHP_EXECUTABLE => /gne/research/apps/php/src/php-5.4.0/sapi/cli/php
MODULEPATH => /gne/research/share/modules
PYTHONSTARTUP => /etc/pythonstart
R_LIBS_SITE => /gne/research/apps/R-local/2.14-20111031/x86_64-linux-2.6-sles11
ITK => /gne/research/apps/BIR/10.0/BIR/ITK-2.4
SDK_HOME => /usr/lib64/jvm/java
LOADEDMODULES => apps/lsf/8.0:apps/apbs/prd:apps/BIG-PI/prd:apps/bioperl/prd:apps/BIR/prd:apps/compass/prd:apps/EMBOSS/prd:apps/fftw/3.2.2_gnu_double:apps/gmap/prd:apps/gne-sequence-analysis/prd:apps/gne-perl-modules/prd:apps/hmmer/prd:apps/Jalview/prd:apps/ldhmmer/prd:apps/moe/2011.10:apps/muscle/prd:apps/mustang/prd:apps/mview/prd:apps/oracle-client/prd:apps/partek/prd:apps/pbs/prd:apps/oracle-client/z_prd:apps/perl-modules/prd:apps/postgresql/prd:apps/protcomp/prd:apps/psipred/prd:apps/pymol/1.4.1:apps/java/6:apps/texlive/2011:apps/root/5.27.04:apps/jags/3.1.0:apps/imagemagick/6.5.9-0:apps/ggobi/2.1.8:apps/hdf5/1.8.4:apps/gsl/1.15:apps/netcdf/4.0.1:apps/openmpi/1.4.3-gnu:apps/R-local/2.14:apps/R/2.14:apps/perl-modules/z_prd:apps/research-utils/prd:apps/qsub-utils/prd:apps/signalp/prd:apps/subversion/prd:apps/TMHMM/prd:apps/unison/prd:apps/weblogo/prd:apps/adobereader/prd:apps/graphviz/prd:apps/seq-utils/prd:dept/research/prd:hosts/z_prd
DCMTK => /gne/research/apps/BIR/10.0/BIR/DCMTK-3.5.4
BLASTDB => /gne/research/data/bioinfo/sequence/blast
LSF_BINDIR => /opt/lsf/8.0/linux2.6-glibc2.3-x86_64/bin
SUDO_COMMAND => /bin/bash
JDK_HOME => /usr/lib64/jvm/java
HOME => /gne/home/compbio
SHLVL => 3
MOE => /gne/research/apps/moe/moe-2011.10/x86_64-linux-2.6-sles11
QT_SYSTEM_DIR => /usr/share/desktop-data
OSTYPE => linux
LESS_ADVANCED_PREPROCESSOR => no
BIR => /gne/research/apps/BIR/10.0/BIR
XCURSOR_THEME =>  
LS_OPTIONS => -N --color=tty -T 0
MPI_DIR => /gne/research/apps/openmpi/1.4.3/x86_64-linux-2.6-sles11/gnu
BINARY_TYPE_HPC =>  
TARGET => AMD_LINUX64
MACHTYPE => x86_64-suse-linux
LOGNAME => compbio
G_FILENAME_ENCODING => @locale,UTF-8,ISO-8859-15,CP1252
LESS => -M -I
CVS_RSH => ssh
SSH_CONNECTION => deleted
XDG_DATA_DIRS => /usr/share:/etc/opt/kde3/share:/opt/kde3/share
XLSF_UIDDIR => /opt/lsf/8.0/linux2.6-glibc2.3-x86_64/lib/uid
MPI_HOME => /gne/research/apps/openmpi/1.4.3/x86_64-linux-2.6-sles11/gnu
MODULESHOME => /gne/research/apps/modules/3.2.6/x86_64-linux-2.6-sles11/Modules/3.2.6
LESSOPEN => lessopen.sh %s
PKG_CONFIG_PATH => /gne/research/apps/netcdf/4.0.1/x86_64-linux-2.6-sles11/lib/pkgconfig:/gne/research/apps/gsl/1.15/x86_64-linux-2.6-sles11/lib/pkgconfig:/gne/research/apps/ggobi/2.1.8/x86_64-linux-2.6-sles11/lib/pkgconfig:/gne/research/apps/jags/3.1.0/x86_64-linux-2.6-sles11/lib/pkgconfig
BLASTMAT => /gne/research/apps/gne-sequence-analysis/libdata/ncbi.data
R_HOME => /gne/research/apps/R/2.14-20111031/x86_64-linux-2.6-sles11/lib64/R
INFOPATH => /gne/research/apps/texlive/2011/texmf/doc/info:/usr/local/info:/usr/share/info:/usr/info
SUDO_GID => 1279
CC => cc
PARTEK => /gne/research/apps/partek/6.6/partekgs
LSF_ENVDIR => /opt/lsf/conf
ORACLE_HOME => /gne/research/apps/oracle-client/prd/x86_64-linux-2.6-sles11
LESSCLOSE => lessclose.sh %s %s
G_BROKEN_FILENAMES => 1
JAVA_ROOT => /gne/research/apps/java/java6/x86_64-linux-2.6-sles11/jdk1.6.0_02
COLORTERM => 1
SEQUTILSBASE => /gne/research/apps/seq-utils/prd/x86_64-linux-2.6-sles11

PHP Variables

Variable => Value
_SERVER["LESSKEY"] => /etc/lesskey.bin
_SERVER["MODULE_VERSION_STACK"] => 3.2.6
_SERVER["MANPATH"] => /usr/share/man
_SERVER["INFODIR"] => /usr/local/info:/usr/share/info:/usr/info
_SERVER["DCMDICPATH"] => /gne/research/apps/BIR/10.0/BIR/DCMTK-3.5.4/lib/dicom.dic
_SERVER["NNTPSERVER"] => news
_SERVER["HOSTNAME"] => reswebdev04
_SERVER["TEST_PHP_SRCDIR"] => /gne/research/apps/php/src/php-5.4.0
_SERVER["R_DEFAULT_PACKAGES"] => stats,graphics,grDevices,utils,datasets,methods,base
_SERVER["DNAUPLOADCONFIGFILE"] => /gne/research/apps/seq-utils/prd/arch-indep/dat/dnaupload.conf
_SERVER["XKEYSYMDB"] => /usr/share/X11/XKeysymDB
_SERVER["SHELL"] => /bin/bash
_SERVER["RESEARCH_PREFIX"] => /gne/research
_SERVER["TERM"] => vt100
_SERVER["HOST"] => reswebdev04
_SERVER["PROFILEREAD"] => true
_SERVER["MAKEFLAGS"] => 
_SERVER["HISTSIZE"] => 1000
_SERVER["SSH_CLIENT"] => deleted
_SERVER["AVW"] => /gne/research/apps/BIR/10.0/BIR/AVW-10.0
_SERVER["PERL5LIB"] => /gne/research/apps/seq-utils/prd/arch-indep/perl5:/gne/research/apps/imagemagick/6.5.9-0/x86_64-linux-2.6-sles11/lib/perl5/site_perl:/gne/research/apps/imagemagick/6.5.9-0/x86_64-linux-2.6-sles11/lib/perl5:/gne/research/apps/perl-modules/prd/lib/perl5/site_perl:/gne/research/apps/perl-modules/prd/lib/perl5:/gne/research/apps/gne-perl-modules/prd/lib/perl5/site_perl:/gne/research/apps/gne-perl-modules/prd/lib/perl5:/gne/research/apps/bioperl/prd/lib/perl5/site_perl:/gne/research/apps/bioperl/prd/lib/perl5:/gne/research/apps/unison/prd/perl5
_SERVER["MAGICK_CONFIGURE_PATH"] => /gne/research/apps/imagemagick/6.5.9-0/arch-indep/config
_SERVER["MORE"] => -sl
_SERVER["LSF_SERVERDIR"] => /opt/lsf/8.0/linux2.6-glibc2.3-x86_64/etc
_SERVER["PBS_HOME"] => /var/spool/PBS
_SERVER["SSH_TTY"] => deleted
_SERVER["SEQUTILSCONFIGDIR"] => /gne/research/apps/seq-utils/prd/arch-indep/dat
_SERVER["LSF_LIBDIR"] => /opt/lsf/8.0/linux2.6-glibc2.3-x86_64/lib
_SERVER["JRE_HOME"] => /usr/lib64/jvm/java/jre
_SERVER["GNE_DEFAULT_R_LIBRARY"] => /gne/research/apps/R/2.14-20111031/x86_64-linux-2.6-sles11/lib64/R/library
_SERVER["GNE_SEQUENCE_ANALYSISROOT"] => /gne/research/apps/gne-sequence-analysis/prd/x86_64-linux-2.6-sles11
_SERVER["MODULEPLATFORM"] => x86_64-linux-2.6-sles11
_SERVER["USER"] => compbio
_SERVER["ANA_DIR"] => /gnet/is2/data/bmi/CT/.ANA_DIR
_SERVER["PHRED_PARAMETER_FILE"] => /gne/research/apps/gne-sequence-analysis/dat/arch-indep/phredpar.dat
_SERVER["LS_COLORS"] => no=00:fi=00:bd=40;33;01:cd=40;33;01:di=01;33:pi=40;33:ln=00:or=01;37;41:so=01;35:ex=01;32:*~=00;35:*.bak=00;35:*-orig=00;35:*.Z=01;36:*.gz=01;36:*.bz2=01;36:*.lzh=01;36:*.tar=01;36:*.taz=01;36:*.tgz=01;36:*.z=01;36:*.zip=01;36:
_SERVER["LD_LIBRARY_PATH"] => /gne/research/apps/R/2.14-20111031/x86_64-linux-2.6-sles11/lib64/R/lib:/gne/research/apps/openmpi/1.4.3/x86_64-linux-2.6-sles11/gnu/lib:/gne/research/apps/netcdf/4.0.1/x86_64-linux-2.6-sles11/lib:/gne/research/apps/gsl/1.15/x86_64-linux-2.6-sles11/lib:/gne/research/apps/hdf5/1.8.4/x86_64-linux-2.6-sles11/lib:/gne/research/apps/ggobi/2.1.8/x86_64-linux-2.6-sles11/lib:/gne/research/apps/imagemagick/6.5.9-0/x86_64-linux-2.6-sles11/lib:/gne/research/apps/jags/3.1.0/x86_64-linux-2.6-sles11/lib:/gne/research/apps/root/5.27.04/x86_64-linux-2.6-sles11/lib/root:/gne/research/apps/gne-sequence-analysis/lib/x86_64-linux-2.6-sles11:/gne/research/apps/gmap/prd/x86_64-linux-2.6-sles11/lib:/gne/research/apps/fftw/3.2.2/x86_64-linux-2.6-sles11/gnu/double/lib:/gne/research/apps/EMBOSS/6.2.0/x86_64-linux-2.6-sles11/lib:/gne/research/apps/BIR/10.0/BIR/AVW-10.0/AMD_LINUX64/lib:/opt/lsf/8.0/linux2.6-glibc2.3-x86_64/lib:/gne/research/apps/oracle-client/prd/x86_64-linux-2.6-sles11/lib
_SERVER["DISABLE_AUTO_AVW_FILE_EXTENSION"] => 1
_SERVER["TWO_TASK"] => bioprd1
_SERVER["JALVIEW"] => /gne/research/apps/Jalview/prd
_SERVER["SWEAVE_STYLEPATH_DEFAULT"] => TRUE
_SERVER["SUDO_USER"] => jlfitz
_SERVER["PARTEKLM_LICENSE_FILE"] => 27000@resflexlm01.gene.com
_SERVER["ORACLE_SID"] => bioprd1
_SERVER["SUDO_UID"] => 1532
_SERVER["XNLSPATH"] => /usr/share/X11/nls
_SERVER["ENV"] => /etc/bash.bashrc
_SERVER["SSH_AUTH_SOCK"] => deleted
_SERVER["HOSTTYPE"] => x86_64
_SERVER["AAVW"] => /gne/research/apps/BIR/10.0/BIR/Analyze-10.0
_SERVER["TEXMFLOCAL"] => /gne/research/apps/R/2.14-20111031/x86_64-linux-2.6-sles11/lib64/R/share/texmf
_SERVER["QSUB_UTILSBASE"] => /gne/research/apps/qsub-utils/prd/arch-indep
_SERVER["USERNAME"] => compbio
_SERVER["APPS"] => /gne/research/apps/BIR/10.0/BIR/Apps-10.0
_SERVER["FROM_HEADER"] => 
_SERVER["MAKELEVEL"] => 1
_SERVER["PAGER"] => less
_SERVER["MFLAGS"] => 
_SERVER["CSHEDIT"] => emacs
_SERVER["XDG_CONFIG_DIRS"] => /etc/xdg
_SERVER["MINICOM"] => -c on
_SERVER["PATH"] => /gne/research/apps/seq-utils/prd/x86_64-linux-2.6-sles11/bin:/gne/research/apps/adobereader/prd/x86_64-linux-2.6-sles11/Adobe/Reader8/bin:/gne/research/apps/unison/prd/tools/bin:/gne/research/apps/subversion/1.6.11/x86_64-linux-2.6-sles11/bin:/gne/research/apps/qsub-utils/prd/arch-indep/bin:/gne/research/apps/research-utils/prd/x86_64-linux-2.6-sles11/bin:/gne/research/apps/research-utils/prd/arch-indep/bin:/gne/research/apps/R/2.14-20111031/x86_64-linux-2.6-sles11/bin:/gne/research/apps/openmpi/1.4.3/x86_64-linux-2.6-sles11/gnu/bin:/gne/research/apps/netcdf/4.0.1/x86_64-linux-2.6-sles11/bin:/gne/research/apps/gsl/1.15/x86_64-linux-2.6-sles11/bin:/gne/research/apps/hdf5/1.8.4/x86_64-linux-2.6-sles11/bin:/gne/research/apps/ggobi/2.1.8/x86_64-linux-2.6-sles11/bin:/gne/research/apps/imagemagick/6.5.9-0/x86_64-linux-2.6-sles11/bin:/gne/research/apps/jags/3.1.0/x86_64-linux-2.6-sles11/bin:/gne/research/apps/root/5.27.04/x86_64-linux-2.6-sles11/bin:/gne/research/apps/texlive/2011/bin/x86_64-linux:/gne/research/apps/java/java6/x86_64-linux-2.6-sles11/jdk1.6.0_02/bin:/gne/research/apps/pymol/1.4.1/x86_64-linux-2.6-sles11/pymol:/gne/research/apps/psipred/prd/x86_64-linux-2.6-sles11/bin:/gne/research/apps/perl-modules/prd/sbin:/gne/research/apps/perl-modules/prd/bin:/usr/pbs/bin:/gne/research/apps/partek/6.6/partekgs/bin:/gne/research/apps/mview/prd/bin:/gne/research/apps/moe/moe-2011.10/x86_64-linux-2.6-sles11/bin-lnux:/gne/research/apps/gne-perl-modules/prd/sbin:/gne/research/apps/gne-perl-modules/prd/bin:/gne/research/apps/gne-sequence-analysis/bin/arch-indep:/gne/research/apps/gne-sequence-analysis/prd/arch-indep/bin:/gne/research/apps/gne-sequence-analysis/bin/x86_64-linux-2.6-sles11:/gne/research/apps/gne-sequence-analysis/prd/x86_64-linux-2.6-sles11/bin:/gne/research/apps/gmap/prd/x86_64-linux-2.6-sles11/bin:/gne/research/apps/fftw/3.2.2/x86_64-linux-2.6-sles11/gnu/double/bin:/gne/research/apps/EMBOSS/6.2.0/x86_64-linux-2.6-sles11/bin:/gne/research/apps/BIR/10.0/BIR/bin:/gne/research/apps/BIR/10.0/BIR/BIRlic-10.0/AMD_LINUX64/bin:/gne/research/apps/BIR/10.0/BIR/Tools:/gne/research/apps/BIR/10.0/BIR/AVW-10.0/AMD_LINUX64/bin:/gne/research/apps/BIR/10.0/BIR/Apps/AMD_LINUX64/bin:/gne/research/apps/BIR/10.0/BIR/DCMTK-3.5.4/AMD_LINUX64/bin:/gne/research/apps/BIR/10.0/BIR/Apps/TK/bin:/gne/research/apps/BIR/10.0/BIR/TCL-TK8.5.2/AMD_LINUX64/bin:/gne/research/apps/bioperl/prd/bin:/opt/lsf/8.0/linux2.6-glibc2.3-x86_64/etc:/opt/lsf/8.0/linux2.6-glibc2.3-x86_64/bin:/gne/research/bin:/gne/home/compbio/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/gne/research/apps/oracle-client/prd/x86_64-linux-2.6-sles11/bin
_SERVER["MAIL"] => /var/mail/jlfitz
_SERVER["MODULE_VERSION"] => 3.2.6
_SERVER["CPU"] => x86_64
_SERVER["_"] => /gne/research/apps/php/src/php-5.4.0/sapi/cli/php
_SERVER["JAVA_BINDIR"] => /gne/research/apps/java/java6/x86_64-linux-2.6-sles11/jdk1.6.0_02/bin
_SERVER["PWD"] => /gne/research/apps/php/src/php-5.4.0
_SERVER["INPUTRC"] => /gne/home/compbio/.inputrc
_SERVER["JAVA_HOME"] => /gne/research/apps/java/java6/x86_64-linux-2.6-sles11/jdk1.6.0_02
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_ENV["LOADEDMODULES"] => apps/lsf/8.0:apps/apbs/prd:apps/BIG-PI/prd:apps/bioperl/prd:apps/BIR/prd:apps/compass/prd:apps/EMBOSS/prd:apps/fftw/3.2.2_gnu_double:apps/gmap/prd:apps/gne-sequence-analysis/prd:apps/gne-perl-modules/prd:apps/hmmer/prd:apps/Jalview/prd:apps/ldhmmer/prd:apps/moe/2011.10:apps/muscle/prd:apps/mustang/prd:apps/mview/prd:apps/oracle-client/prd:apps/partek/prd:apps/pbs/prd:apps/oracle-client/z_prd:apps/perl-modules/prd:apps/postgresql/prd:apps/protcomp/prd:apps/psipred/prd:apps/pymol/1.4.1:apps/java/6:apps/texlive/2011:apps/root/5.27.04:apps/jags/3.1.0:apps/imagemagick/6.5.9-0:apps/ggobi/2.1.8:apps/hdf5/1.8.4:apps/gsl/1.15:apps/netcdf/4.0.1:apps/openmpi/1.4.3-gnu:apps/R-local/2.14:apps/R/2.14:apps/perl-modules/z_prd:apps/research-utils/prd:apps/qsub-utils/prd:apps/signalp/prd:apps/subversion/prd:apps/TMHMM/prd:apps/unison/prd:apps/weblogo/prd:apps/adobereader/prd:apps/graphviz/prd:apps/seq-utils/prd:dept/research/prd:hosts/z_prd
_ENV["DCMTK"] => /gne/research/apps/BIR/10.0/BIR/DCMTK-3.5.4
_ENV["BLASTDB"] => /gne/research/data/bioinfo/sequence/blast
_ENV["LSF_BINDIR"] => /opt/lsf/8.0/linux2.6-glibc2.3-x86_64/bin
_ENV["SUDO_COMMAND"] => /bin/bash
_ENV["JDK_HOME"] => /usr/lib64/jvm/java
_ENV["HOME"] => /gne/home/compbio
_ENV["SHLVL"] => 3
_ENV["MOE"] => /gne/research/apps/moe/moe-2011.10/x86_64-linux-2.6-sles11
_ENV["QT_SYSTEM_DIR"] => /usr/share/desktop-data
_ENV["OSTYPE"] => linux
_ENV["LESS_ADVANCED_PREPROCESSOR"] => no
_ENV["BIR"] => /gne/research/apps/BIR/10.0/BIR
_ENV["XCURSOR_THEME"] => 
_ENV["LS_OPTIONS"] => -N --color=tty -T 0
_ENV["MPI_DIR"] => /gne/research/apps/openmpi/1.4.3/x86_64-linux-2.6-sles11/gnu
_ENV["BINARY_TYPE_HPC"] => 
_ENV["TARGET"] => AMD_LINUX64
_ENV["MACHTYPE"] => x86_64-suse-linux
_ENV["LOGNAME"] => compbio
_ENV["G_FILENAME_ENCODING"] => @locale,UTF-8,ISO-8859-15,CP1252
_ENV["LESS"] => -M -I
_ENV["CVS_RSH"] => ssh
_ENV["SSH_CONNECTION"] => deleted
_ENV["XDG_DATA_DIRS"] => /usr/share:/etc/opt/kde3/share:/opt/kde3/share
_ENV["XLSF_UIDDIR"] => /opt/lsf/8.0/linux2.6-glibc2.3-x86_64/lib/uid
_ENV["MPI_HOME"] => /gne/research/apps/openmpi/1.4.3/x86_64-linux-2.6-sles11/gnu
_ENV["MODULESHOME"] => /gne/research/apps/modules/3.2.6/x86_64-linux-2.6-sles11/Modules/3.2.6
_ENV["LESSOPEN"] => lessopen.sh %s
_ENV["PKG_CONFIG_PATH"] => /gne/research/apps/netcdf/4.0.1/x86_64-linux-2.6-sles11/lib/pkgconfig:/gne/research/apps/gsl/1.15/x86_64-linux-2.6-sles11/lib/pkgconfig:/gne/research/apps/ggobi/2.1.8/x86_64-linux-2.6-sles11/lib/pkgconfig:/gne/research/apps/jags/3.1.0/x86_64-linux-2.6-sles11/lib/pkgconfig
_ENV["BLASTMAT"] => /gne/research/apps/gne-sequence-analysis/libdata/ncbi.data
_ENV["R_HOME"] => /gne/research/apps/R/2.14-20111031/x86_64-linux-2.6-sles11/lib64/R
_ENV["INFOPATH"] => /gne/research/apps/texlive/2011/texmf/doc/info:/usr/local/info:/usr/share/info:/usr/info
_ENV["SUDO_GID"] => 1279
_ENV["CC"] => cc
_ENV["PARTEK"] => /gne/research/apps/partek/6.6/partekgs
_ENV["LSF_ENVDIR"] => /opt/lsf/conf
_ENV["ORACLE_HOME"] => /gne/research/apps/oracle-client/prd/x86_64-linux-2.6-sles11
_ENV["LESSCLOSE"] => lessclose.sh %s %s
_ENV["G_BROKEN_FILENAMES"] => 1
_ENV["JAVA_ROOT"] => /gne/research/apps/java/java6/x86_64-linux-2.6-sles11/jdk1.6.0_02
_ENV["COLORTERM"] => 1
_ENV["SEQUTILSBASE"] => /gne/research/apps/seq-utils/prd/x86_64-linux-2.6-sles11

PHP License
This program is free software; you can redistribute it and/or modify
it under the terms of the PHP License as published by the PHP Group
and included in the distribution in the file:  LICENSE

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

If you did not receive a copy of the PHP license, or have any
questions about PHP licensing, please contact license@php.net.


Build environment

OS:
Linux - Linux reswebdev04 2.6.32.12-0.7-default #1 SMP 2010-05-20 11:14:20 +0200 x86_64

Autoconf:
autoconf (GNU Autoconf) 2.63
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv2+: GNU GPL version 2 or later
<http://gnu.org/licenses/old-licenses/gpl-2.0.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

Written by David J. MacKenzie and Akim Demaille.

Bundled Libtool:
ltmain.sh (GNU libtool) 1.5.26 (1.1220.2.492 2008/01/30 06:40:56)

Copyright (C) 2008  Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

System Libtool:
ltmain.sh (GNU libtool) 2.2.6
Written by Gordon Matzigkeit <gord@gnu.ai.mit.edu>, 1996

Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Compiler:
Using built-in specs.
Target: x86_64-suse-linux
Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.3 --enable-ssp --disable-libssp --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --program-suffix=-4.3 --enable-linux-futex --without-system-libunwind --with-cpu=generic --build=x86_64-suse-linux
Thread model: posix
gcc version 4.3.4 [gcc-4_3-branch revision 152973] (SUSE Linux) 

Bison:
bison (GNU Bison) 2.3
Written by Robert Corbett and Richard Stallman.

Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Libraries:
	linux-vdso.so.1 =>  (0x00007ffff978e000)
	libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00002ae7f4ca5000)
	libresolv.so.2 => /lib64/libresolv.so.2 (0x00002ae7f4ee0000)
	librt.so.1 => /lib64/librt.so.1 (0x00002ae7f50f7000)
	libm.so.6 => /lib64/libm.so.6 (0x00002ae7f5301000)
	libnsl.so.1 => /lib64/libnsl.so.1 (0x00002ae7f5557000)
	libz.so.1 => /lib64/libz.so.1 (0x00002ae7f576f000)
	libxml2.so.2 => /usr/lib64/libxml2.so.2 (0x00002ae7f5986000)
	libdl.so.2 => /lib64/libdl.so.2 (0x00002ae7f5ce2000)
	libc.so.6 => /lib64/libc.so.6 (0x00002ae7f5ee6000)
	libpthread.so.0 => /lib64/libpthread.so.0 (0x00002ae7f6245000)
	/lib64/ld-linux-x86-64.so.2 (0x00002ae7f4a84000)


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