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Test name:
Version: 5.5.11



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PHPInfo

phpinfo()
PHP Version => 5.5.11

System => Linux ngs-sv02.rcbt.tottori-u.ac.jp 2.6.32-358.el6.x86_64 #1 SMP Fri Feb 22 20:37:17 CST 2013 x86_64
Build Date => Apr 25 2014 16:03:03
Configure Command =>  '../Linux_tools/php-5.5.11/configure'  '--build=x86_64-redhat-linux-gnu' '--host=x86_64-redhat-linux-gnu' '--target=x86_64-redhat-linux-gnu' '--datadir=/usr/local/share' '--cache-file=../config.cache' '--with-libdir=lib64' '--with-config-file-path=/etc' '--with-config-file-scan-dir=/etc/php.d' '--disable-debug' '--with-pic' '--disable-rpath' '--without-pear' '--with-bz2' '--with-freetype-dir=/usr' '--with-png-dir=/usr' '--with-xpm-dir=/usr' '--enable-gd-native-ttf' '--without-gdbm' '--with-gettext' '--with-gmp' '--with-jpeg-dir=/usr' '--with-openssl' '--with-zlib' '--with-layout=GNU' '--enable-exif' '--enable-ftp' '--enable-sockets' '--enable-sysvsem' '--enable-sysvshm' '--enable-sysvmsg' '--with-kerberos' '--enable-shmop' '--enable-calendar' '--with-libxml-dir=/usr' '--enable-xml' '--with-apxs2=/usr/sbin/apxs' '--without-mysql' '--without-gd' '--disable-dom' '--disable-dba' '--without-unixODBC' '--enable-pdo' '--disable-xmlreader' '--disable-xmlwriter' '--disable-phar' '--disable-fileinfo' '--enable-json' '--without-pspell' '--disable-wddx' '--without-curl' '--disable-posix' '--disable-sysvmsg' '--disable-sysvshm' '--disable-sysvsem' '--with-pdo-pgsql=/opt/PostgreSQL/9.3' '--with-pgsql=/opt/PostgreSQL/9.3' '--without-pdo-sqlite' '--without-iconv'
Server API => Command Line Interface
Virtual Directory Support => disabled
Configuration File (php.ini) Path => /etc
Loaded Configuration File => (none)
Scan this dir for additional .ini files => /etc/php.d
Additional .ini files parsed => (none)
PHP API => 20121113
PHP Extension => 20121212
Zend Extension => 220121212
Zend Extension Build => API220121212,NTS
PHP Extension Build => API20121212,NTS
Debug Build => no
Thread Safety => disabled
Zend Signal Handling => disabled
Zend Memory Manager => enabled
Zend Multibyte Support => disabled
IPv6 Support => enabled
DTrace Support => disabled

Registered PHP Streams => https, ftps, compress.zlib, compress.bzip2, php, file, glob, data, http, ftp
Registered Stream Socket Transports => tcp, udp, unix, udg, ssl, sslv3, sslv2, tls
Registered Stream Filters => zlib.*, bzip2.*, string.rot13, string.toupper, string.tolower, string.strip_tags, convert.*, consumed, dechunk

This program makes use of the Zend Scripting Language Engine:
Zend Engine v2.5.0, Copyright (c) 1998-2014 Zend Technologies


 _______________________________________________________________________


Configuration

bz2

BZip2 Support => Enabled
Stream Wrapper support => compress.bzip2://
Stream Filter support => bzip2.decompress, bzip2.compress
BZip2 Version => 1.0.5, 10-Dec-2007

calendar

Calendar support => enabled

Core

PHP Version => 5.5.11

Directive => Local Value => Master Value
allow_url_fopen => On => On
allow_url_include => Off => Off
always_populate_raw_post_data => Off => Off
arg_separator.input => & => &
arg_separator.output => & => &
asp_tags => Off => Off
auto_append_file => no value => no value
auto_globals_jit => On => On
auto_prepend_file => no value => no value
browscap => no value => no value
default_charset => no value => no value
default_mimetype => text/html => text/html
disable_classes => no value => no value
disable_functions => no value => no value
display_errors => STDERR => STDERR
display_startup_errors => Off => Off
doc_root => no value => no value
docref_ext => no value => no value
docref_root => no value => no value
enable_dl => On => On
enable_post_data_reading => On => On
error_append_string => no value => no value
error_log => no value => no value
error_prepend_string => no value => no value
error_reporting => no value => no value
exit_on_timeout => Off => Off
expose_php => On => On
extension_dir => /usr/local/lib/php/20121212 => /usr/local/lib/php/20121212
file_uploads => On => On
highlight.comment => <font style="color: #FF8000">#FF8000</font> => <font style="color: #FF8000">#FF8000</font>
highlight.default => <font style="color: #0000BB">#0000BB</font> => <font style="color: #0000BB">#0000BB</font>
highlight.html => <font style="color: #000000">#000000</font> => <font style="color: #000000">#000000</font>
highlight.keyword => <font style="color: #007700">#007700</font> => <font style="color: #007700">#007700</font>
highlight.string => <font style="color: #DD0000">#DD0000</font> => <font style="color: #DD0000">#DD0000</font>
html_errors => Off => Off
ignore_repeated_errors => Off => Off
ignore_repeated_source => Off => Off
ignore_user_abort => Off => Off
implicit_flush => On => On
include_path => .: => .:
log_errors => Off => Off
log_errors_max_len => 1024 => 1024
mail.add_x_header => Off => Off
mail.force_extra_parameters => no value => no value
mail.log => no value => no value
max_execution_time => 0 => 0
max_file_uploads => 20 => 20
max_input_nesting_level => 64 => 64
max_input_time => -1 => -1
max_input_vars => 1000 => 1000
memory_limit => 128M => 128M
open_basedir => no value => no value
output_buffering => 0 => 0
output_handler => no value => no value
post_max_size => 8M => 8M
precision => 14 => 14
realpath_cache_size => 16K => 16K
realpath_cache_ttl => 120 => 120
register_argc_argv => On => On
report_memleaks => On => On
report_zend_debug => Off => Off
request_order => no value => no value
sendmail_from => no value => no value
sendmail_path => /usr/sbin/sendmail -t -i  => /usr/sbin/sendmail -t -i 
serialize_precision => 17 => 17
short_open_tag => On => On
SMTP => localhost => localhost
smtp_port => 25 => 25
sql.safe_mode => Off => Off
sys_temp_dir => no value => no value
track_errors => Off => Off
unserialize_callback_func => no value => no value
upload_max_filesize => 2M => 2M
upload_tmp_dir => no value => no value
user_dir => no value => no value
user_ini.cache_ttl => 300 => 300
user_ini.filename => .user.ini => .user.ini
variables_order => EGPCS => EGPCS
xmlrpc_error_number => 0 => 0
xmlrpc_errors => Off => Off
zend.detect_unicode => On => On
zend.enable_gc => On => On
zend.multibyte => Off => Off
zend.script_encoding => no value => no value

ctype

ctype functions => enabled

date

date/time support => enabled
"Olson" Timezone Database Version => 2014.1
Timezone Database => internal
Default timezone => UTC

Directive => Local Value => Master Value
date.default_latitude => 31.7667 => 31.7667
date.default_longitude => 35.2333 => 35.2333
date.sunrise_zenith => 90.583333 => 90.583333
date.sunset_zenith => 90.583333 => 90.583333
date.timezone => no value => no value

ereg

Regex Library => Bundled library enabled

exif

EXIF Support => enabled
EXIF Version => 1.4 $Id$
Supported EXIF Version => 0220
Supported filetypes => JPEG,TIFF

Directive => Local Value => Master Value
exif.decode_jis_intel => JIS => JIS
exif.decode_jis_motorola => JIS => JIS
exif.decode_unicode_intel => UCS-2LE => UCS-2LE
exif.decode_unicode_motorola => UCS-2BE => UCS-2BE
exif.encode_jis => no value => no value
exif.encode_unicode => ISO-8859-15 => ISO-8859-15

filter

Input Validation and Filtering => enabled
Revision => $Id: 4d3899e089e6e45b157975ceef2ac7deb6e9d762 $

Directive => Local Value => Master Value
filter.default => unsafe_raw => unsafe_raw
filter.default_flags => no value => no value

ftp

FTP support => enabled

gettext

GetText Support => enabled

gmp

gmp support => enabled
GMP version => 6.0.0

hash

hash support => enabled
Hashing Engines => md2 md4 md5 sha1 sha224 sha256 sha384 sha512 ripemd128 ripemd160 ripemd256 ripemd320 whirlpool tiger128,3 tiger160,3 tiger192,3 tiger128,4 tiger160,4 tiger192,4 snefru snefru256 gost adler32 crc32 crc32b fnv132 fnv164 joaat haval128,3 haval160,3 haval192,3 haval224,3 haval256,3 haval128,4 haval160,4 haval192,4 haval224,4 haval256,4 haval128,5 haval160,5 haval192,5 haval224,5 haval256,5 

json

json support => enabled
json version => 1.2.1

libxml

libXML support => active
libXML Compiled Version => 2.7.6
libXML Loaded Version => 20706
libXML streams => enabled

openssl

OpenSSL support => enabled
OpenSSL Library Version => OpenSSL 1.0.0-fips 29 Mar 2010
OpenSSL Header Version => OpenSSL 1.0.0-fips 29 Mar 2010

pcre

PCRE (Perl Compatible Regular Expressions) Support => enabled
PCRE Library Version => 8.34 2013-12-15

Directive => Local Value => Master Value
pcre.backtrack_limit => 1000000 => 1000000
pcre.recursion_limit => 100000 => 100000

PDO

PDO support => enabled
PDO drivers => pgsql

pdo_pgsql

PDO Driver for PostgreSQL => enabled
PostgreSQL(libpq) Version => 9.3.0
Module version => 1.0.2
Revision =>  $Id$ 

pgsql

PostgreSQL Support => enabled
PostgreSQL(libpq) Version => 9.3.0
PostgreSQL(libpq)  => PostgreSQL 9.3.0 on x86_64-unknown-linux-gnu, compiled by gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-52), 64-bit
Multibyte character support => enabled
SSL support => enabled
Active Persistent Links => 0
Active Links => 0

Directive => Local Value => Master Value
pgsql.allow_persistent => On => On
pgsql.auto_reset_persistent => Off => Off
pgsql.ignore_notice => Off => Off
pgsql.log_notice => Off => Off
pgsql.max_links => Unlimited => Unlimited
pgsql.max_persistent => Unlimited => Unlimited

Reflection

Reflection => enabled
Version => $Id: 31d836a7ac92a37b5c580836d91ad4736fe2f376 $

session

Session Support => enabled
Registered save handlers => files user 
Registered serializer handlers => php_serialize php php_binary 

Directive => Local Value => Master Value
session.auto_start => Off => Off
session.cache_expire => 180 => 180
session.cache_limiter => nocache => nocache
session.cookie_domain => no value => no value
session.cookie_httponly => Off => Off
session.cookie_lifetime => 0 => 0
session.cookie_path => / => /
session.cookie_secure => Off => Off
session.entropy_file => /dev/urandom => /dev/urandom
session.entropy_length => 32 => 32
session.gc_divisor => 100 => 100
session.gc_maxlifetime => 1440 => 1440
session.gc_probability => 1 => 1
session.hash_bits_per_character => 4 => 4
session.hash_function => 0 => 0
session.name => PHPSESSID => PHPSESSID
session.referer_check => no value => no value
session.save_handler => files => files
session.save_path => no value => no value
session.serialize_handler => php => php
session.upload_progress.cleanup => On => On
session.upload_progress.enabled => On => On
session.upload_progress.freq => 1% => 1%
session.upload_progress.min_freq => 1 => 1
session.upload_progress.name => PHP_SESSION_UPLOAD_PROGRESS => PHP_SESSION_UPLOAD_PROGRESS
session.upload_progress.prefix => upload_progress_ => upload_progress_
session.use_cookies => On => On
session.use_only_cookies => On => On
session.use_strict_mode => Off => Off
session.use_trans_sid => 0 => 0

shmop

shmop support => enabled

SimpleXML

Simplexml support => enabled
Revision => $Id: 363ea1fc44b0b7775e2ec3ce8456530fec6d1660 $
Schema support => enabled

sockets

Sockets Support => enabled

SPL

SPL support => enabled
Interfaces => Countable, OuterIterator, RecursiveIterator, SeekableIterator, SplObserver, SplSubject
Classes => AppendIterator, ArrayIterator, ArrayObject, BadFunctionCallException, BadMethodCallException, CachingIterator, CallbackFilterIterator, DirectoryIterator, DomainException, EmptyIterator, FilesystemIterator, FilterIterator, GlobIterator, InfiniteIterator, InvalidArgumentException, IteratorIterator, LengthException, LimitIterator, LogicException, MultipleIterator, NoRewindIterator, OutOfBoundsException, OutOfRangeException, OverflowException, ParentIterator, RangeException, RecursiveArrayIterator, RecursiveCachingIterator, RecursiveCallbackFilterIterator, RecursiveDirectoryIterator, RecursiveFilterIterator, RecursiveIteratorIterator, RecursiveRegexIterator, RecursiveTreeIterator, RegexIterator, RuntimeException, SplDoublyLinkedList, SplFileInfo, SplFileObject, SplFixedArray, SplHeap, SplMinHeap, SplMaxHeap, SplObjectStorage, SplPriorityQueue, SplQueue, SplStack, SplTempFileObject, UnderflowException, UnexpectedValueException

sqlite3

SQLite3 support => enabled
SQLite3 module version => 0.7-dev
SQLite Library => 3.8.3.1

Directive => Local Value => Master Value
sqlite3.extension_dir => no value => no value

standard

Dynamic Library Support => enabled
Path to sendmail => /usr/sbin/sendmail -t -i 

Directive => Local Value => Master Value
assert.active => 1 => 1
assert.bail => 0 => 0
assert.callback => no value => no value
assert.quiet_eval => 0 => 0
assert.warning => 1 => 1
auto_detect_line_endings => 0 => 0
default_socket_timeout => 60 => 60
from => no value => no value
url_rewriter.tags => a=href,area=href,frame=src,form=,fieldset= => a=href,area=href,frame=src,form=,fieldset=
user_agent => no value => no value

tokenizer

Tokenizer Support => enabled

xml

XML Support => active
XML Namespace Support => active
libxml2 Version => 2.7.6

zlib

ZLib Support => enabled
Stream Wrapper => compress.zlib://
Stream Filter => zlib.inflate, zlib.deflate
Compiled Version => 1.2.3
Linked Version => 1.2.3

Directive => Local Value => Master Value
zlib.output_compression => Off => Off
zlib.output_compression_level => -1 => -1
zlib.output_handler => no value => no value

Additional Modules

Module Name

Environment

Variable => Value
ORBIT_SOCKETDIR => /tmp/orbit-ngs
CXXCPP => /usr/local/bin/cpp-4.9.0 -x c++
GATK => /mnt/samba_3/NGS_tools_bin/GATK/GenomeAnalysisTK-3.1-1/GenomeAnalysisTK.jar
HOSTNAME => ngs-sv02.rcbt.tottori-u.ac.jp
TEST_PHP_SRCDIR => /home/ngs/デスクトップ/Linux_tools/php-5.5.11
IMSETTINGS_INTEGRATE_DESKTOP => yes
SHELL => /bin/bash
TERM => xterm
XDG_SESSION_COOKIE => 597559229dd2cd6ee2f4b76d00000022-1398071664.394605-1709317692
MAKEFLAGS =>  --jobserver-fds=3,4 -j
HISTSIZE => 1000
SNPSIFT => /mnt/samba_3/NGS_tools_bin/snpeff/snpEff-3.5h/SnpSift.jar
SSH_CLIENT => deleted
GTK_RC_FILES => /etc/gtk/gtkrc:/home/ngs/.gtkrc-1.2-gnome2
WINDOWID => 23527905
QTDIR => /usr/lib64/qt-3.3
GTEXTUTILS_CFLAGS => -I/usr/local/include/gtextutils
ATLAS => /usr/local/atlas/lib/libatlas.a
QTINC => /usr/lib64/qt-3.3/include
SSH_TTY => deleted
SNPEFF => /mnt/samba_3/NGS_tools_bin/snpeff/snpEff-3.5h/snpEff.jar
IMSETTINGS_MODULE => IBus
USER => ngs
LS_COLORS => rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
LD_LIBRARY_PATH => /usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib:/usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib:
GNOME_KEYRING_SOCKET => /tmp/keyring-yTOm5p/socket
SSH_AUTH_SOCK => deleted
USERNAME => ngs
SESSION_MANAGER => local/unix:@/tmp/.ICE-unix/3497,unix/unix:/tmp/.ICE-unix/3497
GTEXTUTILS_LIBS => -L/usr/local/lib -lgtextutils
MAKELEVEL => 1
SNPEFF_DIR => /mnt/samba_3/NGS_tools_bin/snpeff/snpEff-3.5h
MFLAGS => - --jobserver-fds=3,4 -j
CPP => /usr/local/bin/cpp-4.9.0
MPIROOT => /usr/local
DESKTOP_SESSION => gnome
PATH => /usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/local/NGS_Tools/abyss/abyss-1.3.7/bin:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19/bcftools:/mnt/samba_3/NGS_tools_bin/bedtools/bedtools-2.17.0/bin:/usr/local/NGS_Tools/bowtie/bowtie-1.0.0:/usr/local/NGS_Tools/bowtie2/bowtie2-2.2.1:/mnt/samba_3/NGS_tools_bin/breakdancer/breakdancer-1.1.2:/mnt/samba_3/NGS_tools_bin/bwa/bwa-0.7.8:/usr/local/NGS_Tools/cmpfastq:/mnt/samba_3/NGS_tools_bin/cnD/cnD-1.3/bin:/usr/local/NGS_Tools/cufflinks/cufflinks-2.1.1.Linux_x86_64:/mnt/samba_3/NGS_tools_bin/exonerate/exonerate-2.2.0/bin:/usr/local/NGS_Tools/fastqc/FastQC-0.10.1:/usr/local/NGS_Tools/fastq_illumina_filter/fastq_illumina_filter-0.1:/usr/local/NGS_Tools/fastx_toolkit/fastx_toolkit-0.0.14/bin:/usr/local/NGS_Tools/igvtools/IGVTools_2.3.26/:/mnt/samba_3/NGS_Tools_bin/pindel/pindel-0.2.5a3:/usr/local/NGS_Tools/prinseq-lite/prinseq-lite-0.20.4:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19:/usr/local/NGS_Tools/tabix/tabix-0.2.6:/usr/local/NGS_Tools/tagdust/tagdust-2.05/bin:/usr/local/NGS_Tools/tophat/tophat-2.0.11.Linux_x86_64:/usr/local/NGS_Tools/vcftools/vcftools_0.1.11/bin:/mnt/samba_3/NGS_tools_bin/velvet/velvet_1.2.10:/mnt/samba_3/shell_scripts:/usr/local/NGS_Tools/abyss/abyss-1.3.7/bin:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19/bcftools:/mnt/samba_3/NGS_tools_bin/bedtools/bedtools-2.17.0/bin:/usr/local/NGS_Tools/bowtie/bowtie-1.0.0:/usr/local/NGS_Tools/bowtie2/bowtie2-2.2.1:/mnt/samba_3/NGS_tools_bin/breakdancer/breakdancer-1.1.2:/mnt/samba_3/NGS_tools_bin/bwa/bwa-0.7.8:/usr/local/NGS_Tools/cmpfastq:/mnt/samba_3/NGS_tools_bin/cnD/cnD-1.3/bin:/usr/local/NGS_Tools/cufflinks/cufflinks-2.1.1.Linux_x86_64:/mnt/samba_3/NGS_tools_bin/delly/delly-0.3.3:/mnt/samba_3/NGS_tools_bin/exonerate/exonerate-2.2.0/bin:/usr/local/NGS_Tools/fastqc/FastQC-0.10.1:/usr/local/NGS_Tools/fastq_illumina_filter/fastq_illumina_filter-0.1:/usr/local/NGS_Tools/fastx_toolkit/fastx_toolkit-0.0.14/bin:/usr/local/NGS_Tools/igvtools/IGVTools_2.3.26/:/mnt/samba_3/NGS_Tools_bin/pindel/pindel-0.2.5a3:/usr/local/NGS_Tools/prinseq-lite/prinseq-lite-0.20.4:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19:/usr/local/NGS_Tools/tabix/tabix-0.2.6:/usr/local/NGS_Tools/tagdust/tagdust-2.05/bin:/usr/local/NGS_Tools/tophat/tophat-2.0.11.Linux_x86_64:/usr/local/NGS_Tools/vcftools/vcftools_0.1.11/bin:/mnt/samba_3/NGS_tools_bin/velvet/velvet_1.2.10:/mnt/samba_3/shell_scripts:/opt/PostgreSQL/9.3/bin
MAIL => /var/spool/mail/ngs
BLAS => /usr/local/atlas/lib/libcblas.a
LAPACK => /usr/local/atlas/lib/liblapack.a
_ => /home/ngs/デスクトップ/tmpdir/sapi/cli/php
PICARD => /mnt/samba_3/NGS_tools_bin/picard/picard-tools-1.110
QT_IM_MODULE => ibus
LD_RUN_PATH => /usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib:/usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib::/usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib::
PWD => /home/ngs/デスクトップ/Linux_tools/php-5.5.11
XMODIFIERS => @im=ibus
GDM_KEYBOARD_LAYOUT => jp
GNOME_KEYRING_PID => 3488
LANG => ja_JP.UTF-8
TEST_PHP_EXECUTABLE => /home/ngs/デスクトップ/tmpdir/sapi/cli/php
MODULEPATH => /usr/share/Modules/modulefiles:/etc/modulefiles
GDM_LANG => ja_JP.UTF-8
LOADEDMODULES =>  
F77 => /usr/local/bin/gfortran-4.9.0
GDMSESSION => gnome
HISTCONTROL => ignoredups
SSH_ASKPASS => /usr/libexec/openssh/gnome-ssh-askpass
CXX => /usr/local/bin/g++-4.9.0
HOME => /home/ngs
SHLVL => 4
ANNOVAR => /mnt/samba_3/NGS_tools_bin/annovar/annovar_2013-08
GNOME_DESKTOP_SESSION_ID => this-is-deprecated
FC => /usr/local/bin/gfortran-4.9.0
LOGNAME => ngs
PYTHONPATH => /usr/local/lib/python2.7/site-packages
QTLIB => /usr/lib64/qt-3.3/lib
CVS_RSH => ssh
SSH_CONNECTION => deleted
SVMERGE => /mnt/samba_3/NGS_tools_bin/SVMerge/SVMerge-1.2r37/bin
DBUS_SESSION_BUS_ADDRESS => unix:abstract=/tmp/dbus-dwQcH37fAD,guid=7b41eb8464962807266a385b00000030
MODULESHOME => /usr/share/Modules
LESSOPEN => |/usr/bin/lesspipe.sh %s
WINDOWPATH => 1
DISPLAY => :0.0
CC => /usr/local/bin/gcc-4.9.0
G_BROKEN_FILENAMES => 1
XAUTHORITY => /var/run/gdm/auth-for-ngs-0qvDvc/database
COLORTERM => gnome-terminal
module => () {  eval `/usr/bin/modulecmd bash $*`
}

PHP Variables

Variable => Value
_SERVER["ORBIT_SOCKETDIR"] => /tmp/orbit-ngs
_SERVER["CXXCPP"] => /usr/local/bin/cpp-4.9.0 -x c++
_SERVER["GATK"] => /mnt/samba_3/NGS_tools_bin/GATK/GenomeAnalysisTK-3.1-1/GenomeAnalysisTK.jar
_SERVER["HOSTNAME"] => ngs-sv02.rcbt.tottori-u.ac.jp
_SERVER["TEST_PHP_SRCDIR"] => /home/ngs/デスクトップ/Linux_tools/php-5.5.11
_SERVER["IMSETTINGS_INTEGRATE_DESKTOP"] => yes
_SERVER["SHELL"] => /bin/bash
_SERVER["TERM"] => xterm
_SERVER["XDG_SESSION_COOKIE"] => 597559229dd2cd6ee2f4b76d00000022-1398071664.394605-1709317692
_SERVER["MAKEFLAGS"] =>  --jobserver-fds=3,4 -j
_SERVER["HISTSIZE"] => 1000
_SERVER["SNPSIFT"] => /mnt/samba_3/NGS_tools_bin/snpeff/snpEff-3.5h/SnpSift.jar
_SERVER["SSH_CLIENT"] => deleted
_SERVER["GTK_RC_FILES"] => /etc/gtk/gtkrc:/home/ngs/.gtkrc-1.2-gnome2
_SERVER["WINDOWID"] => 23527905
_SERVER["QTDIR"] => /usr/lib64/qt-3.3
_SERVER["GTEXTUTILS_CFLAGS"] => -I/usr/local/include/gtextutils
_SERVER["ATLAS"] => /usr/local/atlas/lib/libatlas.a
_SERVER["QTINC"] => /usr/lib64/qt-3.3/include
_SERVER["SSH_TTY"] => deleted
_SERVER["SNPEFF"] => /mnt/samba_3/NGS_tools_bin/snpeff/snpEff-3.5h/snpEff.jar
_SERVER["IMSETTINGS_MODULE"] => IBus
_SERVER["USER"] => ngs
_SERVER["LS_COLORS"] => rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
_SERVER["LD_LIBRARY_PATH"] => /usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib:/usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib:
_SERVER["GNOME_KEYRING_SOCKET"] => /tmp/keyring-yTOm5p/socket
_SERVER["SSH_AUTH_SOCK"] => deleted
_SERVER["USERNAME"] => ngs
_SERVER["SESSION_MANAGER"] => local/unix:@/tmp/.ICE-unix/3497,unix/unix:/tmp/.ICE-unix/3497
_SERVER["GTEXTUTILS_LIBS"] => -L/usr/local/lib -lgtextutils
_SERVER["MAKELEVEL"] => 1
_SERVER["SNPEFF_DIR"] => /mnt/samba_3/NGS_tools_bin/snpeff/snpEff-3.5h
_SERVER["MFLAGS"] => - --jobserver-fds=3,4 -j
_SERVER["CPP"] => /usr/local/bin/cpp-4.9.0
_SERVER["MPIROOT"] => /usr/local
_SERVER["DESKTOP_SESSION"] => gnome
_SERVER["PATH"] => /usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/local/NGS_Tools/abyss/abyss-1.3.7/bin:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19/bcftools:/mnt/samba_3/NGS_tools_bin/bedtools/bedtools-2.17.0/bin:/usr/local/NGS_Tools/bowtie/bowtie-1.0.0:/usr/local/NGS_Tools/bowtie2/bowtie2-2.2.1:/mnt/samba_3/NGS_tools_bin/breakdancer/breakdancer-1.1.2:/mnt/samba_3/NGS_tools_bin/bwa/bwa-0.7.8:/usr/local/NGS_Tools/cmpfastq:/mnt/samba_3/NGS_tools_bin/cnD/cnD-1.3/bin:/usr/local/NGS_Tools/cufflinks/cufflinks-2.1.1.Linux_x86_64:/mnt/samba_3/NGS_tools_bin/exonerate/exonerate-2.2.0/bin:/usr/local/NGS_Tools/fastqc/FastQC-0.10.1:/usr/local/NGS_Tools/fastq_illumina_filter/fastq_illumina_filter-0.1:/usr/local/NGS_Tools/fastx_toolkit/fastx_toolkit-0.0.14/bin:/usr/local/NGS_Tools/igvtools/IGVTools_2.3.26/:/mnt/samba_3/NGS_Tools_bin/pindel/pindel-0.2.5a3:/usr/local/NGS_Tools/prinseq-lite/prinseq-lite-0.20.4:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19:/usr/local/NGS_Tools/tabix/tabix-0.2.6:/usr/local/NGS_Tools/tagdust/tagdust-2.05/bin:/usr/local/NGS_Tools/tophat/tophat-2.0.11.Linux_x86_64:/usr/local/NGS_Tools/vcftools/vcftools_0.1.11/bin:/mnt/samba_3/NGS_tools_bin/velvet/velvet_1.2.10:/mnt/samba_3/shell_scripts:/usr/local/NGS_Tools/abyss/abyss-1.3.7/bin:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19/bcftools:/mnt/samba_3/NGS_tools_bin/bedtools/bedtools-2.17.0/bin:/usr/local/NGS_Tools/bowtie/bowtie-1.0.0:/usr/local/NGS_Tools/bowtie2/bowtie2-2.2.1:/mnt/samba_3/NGS_tools_bin/breakdancer/breakdancer-1.1.2:/mnt/samba_3/NGS_tools_bin/bwa/bwa-0.7.8:/usr/local/NGS_Tools/cmpfastq:/mnt/samba_3/NGS_tools_bin/cnD/cnD-1.3/bin:/usr/local/NGS_Tools/cufflinks/cufflinks-2.1.1.Linux_x86_64:/mnt/samba_3/NGS_tools_bin/delly/delly-0.3.3:/mnt/samba_3/NGS_tools_bin/exonerate/exonerate-2.2.0/bin:/usr/local/NGS_Tools/fastqc/FastQC-0.10.1:/usr/local/NGS_Tools/fastq_illumina_filter/fastq_illumina_filter-0.1:/usr/local/NGS_Tools/fastx_toolkit/fastx_toolkit-0.0.14/bin:/usr/local/NGS_Tools/igvtools/IGVTools_2.3.26/:/mnt/samba_3/NGS_Tools_bin/pindel/pindel-0.2.5a3:/usr/local/NGS_Tools/prinseq-lite/prinseq-lite-0.20.4:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19:/usr/local/NGS_Tools/tabix/tabix-0.2.6:/usr/local/NGS_Tools/tagdust/tagdust-2.05/bin:/usr/local/NGS_Tools/tophat/tophat-2.0.11.Linux_x86_64:/usr/local/NGS_Tools/vcftools/vcftools_0.1.11/bin:/mnt/samba_3/NGS_tools_bin/velvet/velvet_1.2.10:/mnt/samba_3/shell_scripts:/opt/PostgreSQL/9.3/bin
_SERVER["MAIL"] => /var/spool/mail/ngs
_SERVER["BLAS"] => /usr/local/atlas/lib/libcblas.a
_SERVER["LAPACK"] => /usr/local/atlas/lib/liblapack.a
_SERVER["_"] => /home/ngs/デスクトップ/tmpdir/sapi/cli/php
_SERVER["PICARD"] => /mnt/samba_3/NGS_tools_bin/picard/picard-tools-1.110
_SERVER["QT_IM_MODULE"] => ibus
_SERVER["LD_RUN_PATH"] => /usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib:/usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib::/usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib::
_SERVER["PWD"] => /home/ngs/デスクトップ/Linux_tools/php-5.5.11
_SERVER["XMODIFIERS"] => @im=ibus
_SERVER["GDM_KEYBOARD_LAYOUT"] => jp
_SERVER["GNOME_KEYRING_PID"] => 3488
_SERVER["LANG"] => ja_JP.UTF-8
_SERVER["TEST_PHP_EXECUTABLE"] => /home/ngs/デスクトップ/tmpdir/sapi/cli/php
_SERVER["MODULEPATH"] => /usr/share/Modules/modulefiles:/etc/modulefiles
_SERVER["GDM_LANG"] => ja_JP.UTF-8
_SERVER["LOADEDMODULES"] => 
_SERVER["F77"] => /usr/local/bin/gfortran-4.9.0
_SERVER["GDMSESSION"] => gnome
_SERVER["HISTCONTROL"] => ignoredups
_SERVER["SSH_ASKPASS"] => /usr/libexec/openssh/gnome-ssh-askpass
_SERVER["CXX"] => /usr/local/bin/g++-4.9.0
_SERVER["HOME"] => /home/ngs
_SERVER["SHLVL"] => 4
_SERVER["ANNOVAR"] => /mnt/samba_3/NGS_tools_bin/annovar/annovar_2013-08
_SERVER["GNOME_DESKTOP_SESSION_ID"] => this-is-deprecated
_SERVER["FC"] => /usr/local/bin/gfortran-4.9.0
_SERVER["LOGNAME"] => ngs
_SERVER["PYTHONPATH"] => /usr/local/lib/python2.7/site-packages
_SERVER["QTLIB"] => /usr/lib64/qt-3.3/lib
_SERVER["CVS_RSH"] => ssh
_SERVER["SSH_CONNECTION"] => deleted
_SERVER["SVMERGE"] => /mnt/samba_3/NGS_tools_bin/SVMerge/SVMerge-1.2r37/bin
_SERVER["DBUS_SESSION_BUS_ADDRESS"] => unix:abstract=/tmp/dbus-dwQcH37fAD,guid=7b41eb8464962807266a385b00000030
_SERVER["MODULESHOME"] => /usr/share/Modules
_SERVER["LESSOPEN"] => |/usr/bin/lesspipe.sh %s
_SERVER["WINDOWPATH"] => 1
_SERVER["DISPLAY"] => :0.0
_SERVER["CC"] => /usr/local/bin/gcc-4.9.0
_SERVER["G_BROKEN_FILENAMES"] => 1
_SERVER["XAUTHORITY"] => /var/run/gdm/auth-for-ngs-0qvDvc/database
_SERVER["COLORTERM"] => gnome-terminal
_SERVER["module"] => () {  eval `/usr/bin/modulecmd bash $*`
}
_SERVER["PHP_SELF"] => 
_SERVER["SCRIPT_NAME"] => 
_SERVER["SCRIPT_FILENAME"] => 
_SERVER["PATH_TRANSLATED"] => 
_SERVER["DOCUMENT_ROOT"] => 
_SERVER["REQUEST_TIME_FLOAT"] => 1398410032.8163
_SERVER["REQUEST_TIME"] => 1398410032
_SERVER["argv"] => Array
(
)

_SERVER["argc"] => 0
_ENV["ORBIT_SOCKETDIR"] => /tmp/orbit-ngs
_ENV["CXXCPP"] => /usr/local/bin/cpp-4.9.0 -x c++
_ENV["GATK"] => /mnt/samba_3/NGS_tools_bin/GATK/GenomeAnalysisTK-3.1-1/GenomeAnalysisTK.jar
_ENV["HOSTNAME"] => ngs-sv02.rcbt.tottori-u.ac.jp
_ENV["TEST_PHP_SRCDIR"] => /home/ngs/デスクトップ/Linux_tools/php-5.5.11
_ENV["IMSETTINGS_INTEGRATE_DESKTOP"] => yes
_ENV["SHELL"] => /bin/bash
_ENV["TERM"] => xterm
_ENV["XDG_SESSION_COOKIE"] => 597559229dd2cd6ee2f4b76d00000022-1398071664.394605-1709317692
_ENV["MAKEFLAGS"] =>  --jobserver-fds=3,4 -j
_ENV["HISTSIZE"] => 1000
_ENV["SNPSIFT"] => /mnt/samba_3/NGS_tools_bin/snpeff/snpEff-3.5h/SnpSift.jar
_ENV["SSH_CLIENT"] => deleted
_ENV["GTK_RC_FILES"] => /etc/gtk/gtkrc:/home/ngs/.gtkrc-1.2-gnome2
_ENV["WINDOWID"] => 23527905
_ENV["QTDIR"] => /usr/lib64/qt-3.3
_ENV["GTEXTUTILS_CFLAGS"] => -I/usr/local/include/gtextutils
_ENV["ATLAS"] => /usr/local/atlas/lib/libatlas.a
_ENV["QTINC"] => /usr/lib64/qt-3.3/include
_ENV["SSH_TTY"] => deleted
_ENV["SNPEFF"] => /mnt/samba_3/NGS_tools_bin/snpeff/snpEff-3.5h/snpEff.jar
_ENV["IMSETTINGS_MODULE"] => IBus
_ENV["USER"] => ngs
_ENV["LS_COLORS"] => rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
_ENV["LD_LIBRARY_PATH"] => /usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib:/usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib:
_ENV["GNOME_KEYRING_SOCKET"] => /tmp/keyring-yTOm5p/socket
_ENV["SSH_AUTH_SOCK"] => deleted
_ENV["USERNAME"] => ngs
_ENV["SESSION_MANAGER"] => local/unix:@/tmp/.ICE-unix/3497,unix/unix:/tmp/.ICE-unix/3497
_ENV["GTEXTUTILS_LIBS"] => -L/usr/local/lib -lgtextutils
_ENV["MAKELEVEL"] => 1
_ENV["SNPEFF_DIR"] => /mnt/samba_3/NGS_tools_bin/snpeff/snpEff-3.5h
_ENV["MFLAGS"] => - --jobserver-fds=3,4 -j
_ENV["CPP"] => /usr/local/bin/cpp-4.9.0
_ENV["MPIROOT"] => /usr/local
_ENV["DESKTOP_SESSION"] => gnome
_ENV["PATH"] => /usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/local/NGS_Tools/abyss/abyss-1.3.7/bin:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19/bcftools:/mnt/samba_3/NGS_tools_bin/bedtools/bedtools-2.17.0/bin:/usr/local/NGS_Tools/bowtie/bowtie-1.0.0:/usr/local/NGS_Tools/bowtie2/bowtie2-2.2.1:/mnt/samba_3/NGS_tools_bin/breakdancer/breakdancer-1.1.2:/mnt/samba_3/NGS_tools_bin/bwa/bwa-0.7.8:/usr/local/NGS_Tools/cmpfastq:/mnt/samba_3/NGS_tools_bin/cnD/cnD-1.3/bin:/usr/local/NGS_Tools/cufflinks/cufflinks-2.1.1.Linux_x86_64:/mnt/samba_3/NGS_tools_bin/exonerate/exonerate-2.2.0/bin:/usr/local/NGS_Tools/fastqc/FastQC-0.10.1:/usr/local/NGS_Tools/fastq_illumina_filter/fastq_illumina_filter-0.1:/usr/local/NGS_Tools/fastx_toolkit/fastx_toolkit-0.0.14/bin:/usr/local/NGS_Tools/igvtools/IGVTools_2.3.26/:/mnt/samba_3/NGS_Tools_bin/pindel/pindel-0.2.5a3:/usr/local/NGS_Tools/prinseq-lite/prinseq-lite-0.20.4:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19:/usr/local/NGS_Tools/tabix/tabix-0.2.6:/usr/local/NGS_Tools/tagdust/tagdust-2.05/bin:/usr/local/NGS_Tools/tophat/tophat-2.0.11.Linux_x86_64:/usr/local/NGS_Tools/vcftools/vcftools_0.1.11/bin:/mnt/samba_3/NGS_tools_bin/velvet/velvet_1.2.10:/mnt/samba_3/shell_scripts:/usr/local/NGS_Tools/abyss/abyss-1.3.7/bin:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19/bcftools:/mnt/samba_3/NGS_tools_bin/bedtools/bedtools-2.17.0/bin:/usr/local/NGS_Tools/bowtie/bowtie-1.0.0:/usr/local/NGS_Tools/bowtie2/bowtie2-2.2.1:/mnt/samba_3/NGS_tools_bin/breakdancer/breakdancer-1.1.2:/mnt/samba_3/NGS_tools_bin/bwa/bwa-0.7.8:/usr/local/NGS_Tools/cmpfastq:/mnt/samba_3/NGS_tools_bin/cnD/cnD-1.3/bin:/usr/local/NGS_Tools/cufflinks/cufflinks-2.1.1.Linux_x86_64:/mnt/samba_3/NGS_tools_bin/delly/delly-0.3.3:/mnt/samba_3/NGS_tools_bin/exonerate/exonerate-2.2.0/bin:/usr/local/NGS_Tools/fastqc/FastQC-0.10.1:/usr/local/NGS_Tools/fastq_illumina_filter/fastq_illumina_filter-0.1:/usr/local/NGS_Tools/fastx_toolkit/fastx_toolkit-0.0.14/bin:/usr/local/NGS_Tools/igvtools/IGVTools_2.3.26/:/mnt/samba_3/NGS_Tools_bin/pindel/pindel-0.2.5a3:/usr/local/NGS_Tools/prinseq-lite/prinseq-lite-0.20.4:/mnt/samba_3/NGS_tools_bin/samtools/samtools-0.1.19:/usr/local/NGS_Tools/tabix/tabix-0.2.6:/usr/local/NGS_Tools/tagdust/tagdust-2.05/bin:/usr/local/NGS_Tools/tophat/tophat-2.0.11.Linux_x86_64:/usr/local/NGS_Tools/vcftools/vcftools_0.1.11/bin:/mnt/samba_3/NGS_tools_bin/velvet/velvet_1.2.10:/mnt/samba_3/shell_scripts:/opt/PostgreSQL/9.3/bin
_ENV["MAIL"] => /var/spool/mail/ngs
_ENV["BLAS"] => /usr/local/atlas/lib/libcblas.a
_ENV["LAPACK"] => /usr/local/atlas/lib/liblapack.a
_ENV["_"] => /home/ngs/デスクトップ/tmpdir/sapi/cli/php
_ENV["PICARD"] => /mnt/samba_3/NGS_tools_bin/picard/picard-tools-1.110
_ENV["QT_IM_MODULE"] => ibus
_ENV["LD_RUN_PATH"] => /usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib:/usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib::/usr/local/lib:/usr/local/lib64:/usr/local/python/python-2.7/lib::
_ENV["PWD"] => /home/ngs/デスクトップ/Linux_tools/php-5.5.11
_ENV["XMODIFIERS"] => @im=ibus
_ENV["GDM_KEYBOARD_LAYOUT"] => jp
_ENV["GNOME_KEYRING_PID"] => 3488
_ENV["LANG"] => ja_JP.UTF-8
_ENV["TEST_PHP_EXECUTABLE"] => /home/ngs/デスクトップ/tmpdir/sapi/cli/php
_ENV["MODULEPATH"] => /usr/share/Modules/modulefiles:/etc/modulefiles
_ENV["GDM_LANG"] => ja_JP.UTF-8
_ENV["LOADEDMODULES"] => 
_ENV["F77"] => /usr/local/bin/gfortran-4.9.0
_ENV["GDMSESSION"] => gnome
_ENV["HISTCONTROL"] => ignoredups
_ENV["SSH_ASKPASS"] => /usr/libexec/openssh/gnome-ssh-askpass
_ENV["CXX"] => /usr/local/bin/g++-4.9.0
_ENV["HOME"] => /home/ngs
_ENV["SHLVL"] => 4
_ENV["ANNOVAR"] => /mnt/samba_3/NGS_tools_bin/annovar/annovar_2013-08
_ENV["GNOME_DESKTOP_SESSION_ID"] => this-is-deprecated
_ENV["FC"] => /usr/local/bin/gfortran-4.9.0
_ENV["LOGNAME"] => ngs
_ENV["PYTHONPATH"] => /usr/local/lib/python2.7/site-packages
_ENV["QTLIB"] => /usr/lib64/qt-3.3/lib
_ENV["CVS_RSH"] => ssh
_ENV["SSH_CONNECTION"] => deleted
_ENV["SVMERGE"] => /mnt/samba_3/NGS_tools_bin/SVMerge/SVMerge-1.2r37/bin
_ENV["DBUS_SESSION_BUS_ADDRESS"] => unix:abstract=/tmp/dbus-dwQcH37fAD,guid=7b41eb8464962807266a385b00000030
_ENV["MODULESHOME"] => /usr/share/Modules
_ENV["LESSOPEN"] => |/usr/bin/lesspipe.sh %s
_ENV["WINDOWPATH"] => 1
_ENV["DISPLAY"] => :0.0
_ENV["CC"] => /usr/local/bin/gcc-4.9.0
_ENV["G_BROKEN_FILENAMES"] => 1
_ENV["XAUTHORITY"] => /var/run/gdm/auth-for-ngs-0qvDvc/database
_ENV["COLORTERM"] => gnome-terminal
_ENV["module"] => () {  eval `/usr/bin/modulecmd bash $*`
}

PHP License
This program is free software; you can redistribute it and/or modify
it under the terms of the PHP License as published by the PHP Group
and included in the distribution in the file:  LICENSE

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

If you did not receive a copy of the PHP license, or have any
questions about PHP licensing, please contact license@php.net.


Build environment

OS:
Linux - Linux ngs-sv02.rcbt.tottori-u.ac.jp 2.6.32-358.el6.x86_64 #1 SMP Fri Feb 22 20:37:17 CST 2013 x86_64

Autoconf:
autoconf (GNU Autoconf) 2.63
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv2+: GNU GPL version 2 or later
<http://gnu.org/licenses/old-licenses/gpl-2.0.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

Written by David J. MacKenzie and Akim Demaille.

Bundled Libtool:
ltmain.sh (GNU libtool) 1.5.26 (1.1220.2.492 2008/01/30 06:40:56)

Copyright (C) 2008  Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

System Libtool:
libtool (GNU libtool) 2.4.2
Written by Gordon Matzigkeit <gord@gnu.ai.mit.edu>, 1996

Copyright (C) 2011 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Compiler:
組み込み spec を使用しています。
COLLECT_GCC=/usr/local/bin/gcc-4.9.0
COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-unknown-linux-gnu/4.9.0/lto-wrapper
ターゲット: x86_64-unknown-linux-gnu
configure 設定: ../Linux_tools/gcc-4.9.0/configure --disable-multilib --program-suffix=-4.9.0 --with-gmp=/usr/local --with-mpfr=/usr/local --with-mpc=/usr/local --with-isl=/usr/local --with-cloog=/usr/local
スレッドモデル: posix
gcc バージョン 4.9.0 (GCC) 

Bison:
bison (GNU Bison) 2.4.1
Written by Robert Corbett and Richard Stallman.

Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
[参考訳 -- 法的効力は英文が適用されます]
これはフリーソフトウェアです -- 複製についての条件はソースを見ましょう。
一切の保証はありません -- 商業性や目的適合性についての保証すらありません。

Libraries:
	linux-vdso.so.1 =>  (0x00007fffe89ff000)
	libcrypt.so.1 => /lib64/libcrypt.so.1 (0x0000003b43600000)
	libpq.so.5 => /usr/lib64/libpq.so.5 (0x0000003b39a00000)
	libgmp.so.10 => /usr/local/lib/libgmp.so.10 (0x00007f165a575000)
	libbz2.so.1 => /lib64/libbz2.so.1 (0x0000003b4be00000)
	libz.so.1 => /lib64/libz.so.1 (0x0000003b39600000)
	librt.so.1 => /lib64/librt.so.1 (0x00007f165a36c000)
	libm.so.6 => /lib64/libm.so.6 (0x0000003b38600000)
	libdl.so.2 => /lib64/libdl.so.2 (0x0000003b38e00000)
	libnsl.so.1 => /lib64/libnsl.so.1 (0x0000003b4b200000)
	libxml2.so.2 => /usr/lib64/libxml2.so.2 (0x0000003b44200000)
	libgssapi_krb5.so.2 => /lib64/libgssapi_krb5.so.2 (0x0000003b46a00000)
	libkrb5.so.3 => /lib64/libkrb5.so.3 (0x0000003b44e00000)
	libk5crypto.so.3 => /lib64/libk5crypto.so.3 (0x0000003b45a00000)
	libcom_err.so.2 => /lib64/libcom_err.so.2 (0x0000003b43a00000)
	libssl.so.10 => /usr/lib64/libssl.so.10 (0x0000003b47600000)
	libcrypto.so.10 => /usr/lib64/libcrypto.so.10 (0x0000003b46200000)
	libc.so.6 => /lib64/libc.so.6 (0x0000003b38a00000)
	libresolv.so.2 => /lib64/libresolv.so.2 (0x0000003b3a600000)
	libfreebl3.so => /lib64/libfreebl3.so (0x0000003b43200000)
	libldap_r-2.4.so.2 => /lib64/libldap_r-2.4.so.2 (0x00007f165a113000)
	libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003b39200000)
	/lib64/ld-linux-x86-64.so.2 (0x0000003b38200000)
	libkrb5support.so.0 => /lib64/libkrb5support.so.0 (0x0000003b45200000)
	libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x0000003b44a00000)
	liblber-2.4.so.2 => /lib64/liblber-2.4.so.2 (0x0000003b4b600000)
	libssl3.so => /usr/lib64/libssl3.so (0x0000003b49200000)
	libsmime3.so => /usr/lib64/libsmime3.so (0x0000003b48a00000)
	libnss3.so => /usr/lib64/libnss3.so (0x0000003b48600000)
	libnssutil3.so => /usr/lib64/libnssutil3.so (0x0000003b48200000)
	libplds4.so => /lib64/libplds4.so (0x0000003b47200000)
	libplc4.so => /lib64/libplc4.so (0x0000003b46e00000)
	libnspr4.so => /lib64/libnspr4.so (0x0000003b47a00000)
	libsasl2.so.2 => /usr/lib64/libsasl2.so.2 (0x0000003b4a200000)
	libselinux.so.1 => /lib64/libselinux.so.1 (0x0000003b3a200000)


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